Variant report

Variant	rs200562
Chromosome Location	chr1:168822671-168822672
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10800387	0.92[EUR][1000 genomes]
rs10800388	0.92[EUR][1000 genomes]
rs10918996	0.88[CHB][hapmap]
rs10918999	0.92[EUR][1000 genomes]
rs12035896	0.92[EUR][1000 genomes]
rs12047566	0.85[EUR][1000 genomes]
rs17102	0.89[EUR][1000 genomes]
rs200558	0.92[EUR][1000 genomes]
rs200559	0.93[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs200561	0.93[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs200565	0.92[EUR][1000 genomes]
rs200571	0.92[EUR][1000 genomes]
rs200573	0.95[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs2206295	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2206296	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2419382	0.91[EUR][1000 genomes]
rs6670747	0.92[EUR][1000 genomes]
rs6683811	0.92[EUR][1000 genomes]
rs6695006	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869415	chr1:168467284-169153863	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
2	nsv831847	chr1:168669877-168850129	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv464250	chr1:168772393-168826032	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv548145	chr1:168772393-168826032	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv528885	chr1:168820748-168826032	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:168818800-168830600	Weak transcription	Stomach Mucosa	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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