Variant report

Variant	rs200590608
Chromosome Location	chr9:100954755-100954756
allele	-/AGCTGCAGC
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:100939196..100942358-chr9:100952088..100954820,4	MCF-7	breast:
2	chr9:100817834..100821135-chr9:100954026..100958556,6	MCF-7	breast:
3	chr9:100952914..100958060-chr9:101016344..101019894,9	MCF-7	breast:
4	chr9:100880793..100881841-chr9:100954446..100955221,3	MCF-7	breast:
5	chr19:39897006..39897650-chr9:100954646..100955312,2	Hela-S3	cervix:
6	chr9:100951866..100957184-chr9:101014234..101020511,10	K562	blood:
7	chr9:100932527..100936703-chr9:100952110..100957364,6	MCF-7	breast:
8	chr9:100880445..100882322-chr9:100953652..100955695,2	K562	blood:
9	chr9:100880288..100886270-chr9:100953608..100957100,8	MCF-7	breast:
10	chr9:100746284..100748016-chr9:100953069..100955569,2	MCF-7	breast:
11	chr9:100835251..100838541-chr9:100953348..100956508,6	MCF-7	breast:
12	chr9:100877974..100882322-chr9:100953652..100957621,5	K562	blood:
13	chr9:100934419..100936711-chr9:100950978..100955014,5	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000128016	Chromatin interaction
ENSG00000106785	Chromatin interaction
ENSG00000095380	Chromatin interaction
ENSG00000106789	Chromatin interaction
ENSG00000136938	Chromatin interaction
ENSG00000095383	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053729	chr9:100909554-100997718	Weak transcription Strong transcription Enhancers Genic enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv520067	chr9:100927161-100978542	Genic enhancers Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv430085	chr9:100928245-101339645	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	nsv831663	chr9:100941048-101109492	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	nsv1045780	chr9:100943318-101080389	Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
6	nsv540180	chr9:100943318-101080389	Enhancers Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
7	esv3415002	chr9:100953931-100956079	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100953200-100955400	Active TSS	Esophagus	oesophagus
2	chr9:100953200-100955600	Active TSS	Gastric	stomach
3	chr9:100953400-100954800	Flanking Active TSS	Colonic Mucosa	Colon
4	chr9:100953600-100954800	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr9:100953600-100955400	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr9:100953600-100955600	Active TSS	ES-I3 Cell Line	embryonic stem cell
7	chr9:100953600-100955800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr9:100953600-100955800	Active TSS	Rectal Smooth Muscle	rectum
9	chr9:100953800-100954800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr9:100953800-100954800	Flanking Bivalent TSS/Enh	Fetal Brain Female	brain
11	chr9:100953800-100954800	Flanking Active TSS	Dnd41	blood
12	chr9:100953800-100955400	Active TSS	Fetal Intestine Small	intestine
13	chr9:100953800-100955800	Flanking Active TSS	HMEC	breast
14	chr9:100953800-100956000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
15	chr9:100954000-100954800	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr9:100954000-100954800	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
17	chr9:100954000-100954800	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
18	chr9:100954000-100954800	Flanking Active TSS	Fetal Thymus	thymus
19	chr9:100954000-100955000	Flanking Active TSS	Primary hematopoietic stem cells	blood
20	chr9:100954000-100955400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
21	chr9:100954000-100955400	Active TSS	Placenta Amnion	Placenta Amnion
22	chr9:100954000-100955600	Active TSS	H9 Cell Line	embryonic stem cell
23	chr9:100954000-100955600	Active TSS	Sigmoid Colon	Sigmoid Colon
24	chr9:100954000-100955600	Active TSS	Stomach Mucosa	stomach
25	chr9:100954000-100955600	Active TSS	A549	lung
26	chr9:100954000-100955800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
27	chr9:100954000-100955800	Active TSS	Right Ventricle	heart
28	chr9:100954000-100956000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr9:100954000-100956000	Active TSS	Duodenum Smooth Muscle	Duodenum
30	chr9:100954000-100956000	Active TSS	Pancreatic Islets	Pancreatic Islet
31	chr9:100954200-100954800	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
32	chr9:100954200-100954800	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
33	chr9:100954200-100954800	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr9:100954200-100954800	Flanking Active TSS	Adipose Nuclei	Adipose
35	chr9:100954200-100954800	Flanking Active TSS	Liver	Liver
36	chr9:100954200-100954800	Flanking Active TSS	Brain Hippocampus Middle	brain
37	chr9:100954200-100954800	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
38	chr9:100954200-100955200	Active TSS	Rectal Mucosa Donor 29	rectum
39	chr9:100954200-100955400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr9:100954200-100955400	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr9:100954200-100955400	Active TSS	Duodenum Mucosa	Duodenum
42	chr9:100954200-100955400	Active TSS	Osteobl	bone
43	chr9:100954200-100955600	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr9:100954200-100955600	Active TSS	HUES6 Cell Line	embryonic stem cell
45	chr9:100954200-100955600	Active TSS	iPS-15b Cell Line	embryonic stem cell
46	chr9:100954200-100955600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
47	chr9:100954200-100955600	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr9:100954200-100955600	Active TSS	Hela-S3	cervix
49	chr9:100954200-100955600	Active TSS	HepG2	liver
50	chr9:100954200-100955600	Active TSS	HSMM	muscle

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