Variant report

Variant	rs200591877
Chromosome Location	chr9:104150077-104150078
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:42)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:42 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SMC3	chr9:104150072-104150518	K562	blood:	n/a	n/a
2	POLR2A	chr9:104150051-104151161	HepG2	liver:	n/a	n/a
3	ARID3A	chr9:104150026-104151413	HepG2	liver:	n/a	n/a
4	CTCF	chr9:104150010-104150448	HepG2	liver:	n/a	n/a
5	FOXA2	chr9:104149885-104152240	HepG2	liver:	n/a	n/a
6	RAD21	chr9:104149994-104150528	HCT-116	colon:	n/a	n/a
7	FOXA2	chr9:104150025-104150484	A549	lung:	n/a	n/a
8	EP300	chr9:104150035-104150483	HepG2	liver:	n/a	n/a
9	CTCF	chr9:104150077-104150518	K562	blood:	n/a	n/a
10	POLR2A	chr9:104147384-104152636	K562	blood:	n/a	n/a
11	TEAD4	chr9:104149996-104151429	HepG2	liver:	n/a	n/a
12	CTCF	chr9:104149236-104151356	A549	lung:	n/a	chr9:104149368-104149375
13	EP300	chr9:104149990-104150531	HepG2	liver:	n/a	n/a
14	CTCF	chr9:104150034-104150423	K562	blood:	n/a	n/a
15	RAD21	chr9:104149999-104150317	K562	blood:	n/a	n/a
16	MYBL2	chr9:104149778-104151089	HepG2	liver:	n/a	n/a
17	IRF1	chr9:104149506-104150434	K562	blood:	n/a	n/a
18	SMC3	chr9:104149856-104151215	HepG2	liver:	n/a	n/a
19	NFIC	chr9:104149382-104151366	HepG2	liver:	n/a	n/a
20	MBD4	chr9:104149968-104150658	HepG2	liver:	n/a	n/a
21	CTCF	chr9:104150054-104150545	HCT-116	colon:	n/a	n/a
22	RAD21	chr9:104150055-104150362	SK-N-SH_RA	brain:	n/a	n/a
23	MYBL2	chr9:104150001-104150671	HepG2	liver:	n/a	n/a
24	CTCF	chr9:104150008-104150536	MCF-7	breast:	n/a	n/a
25	RAD21	chr9:104149820-104150610	HepG2	liver:	n/a	n/a
26	FOXA1	chr9:104149974-104150551	HepG2	liver:	n/a	n/a
27	CTCF	chr9:104150029-104150520	A549	lung:	n/a	n/a
28	FOXA1	chr9:104150036-104150570	HepG2	liver:	n/a	n/a
29	CTCF	chr9:104150066-104150445	GM12878	blood:	n/a	n/a
30	CTCF	chr9:104150072-104150442	H1-hESC	embryonic stem cell:	n/a	n/a
31	FOXA2	chr9:104150045-104150468	A549	lung:	n/a	n/a
32	CTCF	chr9:104150070-104150452	IMR90	lung:	n/a	n/a
33	RAD21	chr9:104149838-104151245	HepG2	liver:	n/a	n/a
34	RAD21	chr9:104149940-104150518	A549	lung:	n/a	n/a
35	POLR2A	chr9:104149980-104150100	MCF10A-Er-Src	breast:	n/a	n/a
36	CTCF	chr9:104149877-104150604	SK-N-SH	brain:	n/a	n/a
37	MAFF	chr9:104149891-104150421	K562	blood:	n/a	n/a
38	CTCF	chr9:104149974-104150521	HCT-116	colon:	n/a	n/a
39	RAD21	chr9:104149934-104150550	A549	lung:	n/a	n/a
40	CTCF	chr9:104150045-104150527	K562	blood:	n/a	n/a
41	CTCF	chr9:104150043-104150335	A549	lung:	n/a	n/a
42	FOXA1	chr9:104149891-104150596	HepG2	liver:	n/a	n/a

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:104145330..104147001-chr9:104148819..104150528,2	MCF-7	breast:
2	chr9:104078130..104078783-chr9:104150002..104150619,2	MCF-7	breast:
3	chr9:104078007..104078883-chr9:104149799..104150989,4	MCF-7	breast:
4	chr9:104098017..104098827-chr9:104149700..104150287,2	K562	blood:
5	chr9:104146547..104152154-chr9:104159060..104162261,6	K562	blood:
6	chr9:104149633..104152570-chr9:104154465..104155982,2	K562	blood:
7	chr9:104148610..104154266-chr9:104158623..104161916,13	K562	blood:
8	chr9:104149785..104150719-chr9:104210901..104212181,4	MCF-7	breast:
9	chr9:104145537..104147383-chr9:104148751..104150481,2	K562	blood:
10	chr9:104077877..104078935-chr9:104149802..104150527,3	K562	blood:

No data

Variant related genes	Relation type
BAAT	TF binding region
ENSG00000270982	Chromatin interaction
ENSG00000136881	Chromatin interaction
ENSG00000136897	Chromatin interaction
ENSG00000136870	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3483873	chr9:104149936-104150910	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:104117800-104160000	Weak transcription	Pancreas	Pancrea
2	chr9:104139000-104150400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr9:104139000-104156600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr9:104139200-104150600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr9:104139200-104151400	Weak transcription	Osteobl	bone
6	chr9:104139400-104151600	Weak transcription	NH-A	brain
7	chr9:104142800-104151000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr9:104142800-104151000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr9:104143000-104150800	Weak transcription	HMEC	breast
10	chr9:104144600-104156600	Weak transcription	Aorta	Aorta
11	chr9:104144800-104151400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr9:104144800-104159800	Weak transcription	NHEK	skin
13	chr9:104145400-104150400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr9:104145800-104152000	Weak transcription	Brain Substantia Nigra	brain
15	chr9:104146400-104150800	Weak transcription	NHDF-Ad	bronchial
16	chr9:104146600-104150800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr9:104146800-104150200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr9:104146800-104159800	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr9:104147400-104150200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr9:104147600-104150200	Weak transcription	Left Ventricle	heart
21	chr9:104147600-104156600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
22	chr9:104147600-104160200	Weak transcription	Gastric	stomach
23	chr9:104147800-104150200	Weak transcription	Brain Hippocampus Middle	brain
24	chr9:104147800-104150600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr9:104147800-104150800	Weak transcription	Primary T cells from cord blood	blood
26	chr9:104147800-104152800	Weak transcription	Thymus	Thymus
27	chr9:104147800-104160000	Weak transcription	HSMMtube	muscle
28	chr9:104148000-104150200	Weak transcription	Duodenum Mucosa	Duodenum
29	chr9:104148000-104150200	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr9:104148000-104150200	Weak transcription	Fetal Muscle Leg	muscle
31	chr9:104148000-104150400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
32	chr9:104148000-104150400	Weak transcription	Primary T helper cells fromperipheralblood	blood
33	chr9:104148000-104150800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
34	chr9:104148000-104150800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr9:104148000-104151400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr9:104148000-104151400	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr9:104148000-104152600	Weak transcription	H9 Cell Line	embryonic stem cell
38	chr9:104148000-104157600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
39	chr9:104148000-104159400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
40	chr9:104148200-104150200	Weak transcription	Primary hematopoietic stem cells	blood
41	chr9:104148200-104150200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
42	chr9:104148200-104150200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr9:104148200-104150200	Weak transcription	Rectal Mucosa Donor 31	rectum
44	chr9:104148200-104150400	Weak transcription	Primary T cells fromperipheralblood	blood
45	chr9:104148200-104150400	Weak transcription	Primary T helper cells PMA-I stimulated	--
46	chr9:104148200-104150400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr9:104148200-104150600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
48	chr9:104148200-104150800	Weak transcription	Primary B cells from peripheral blood	blood
49	chr9:104148200-104150800	Weak transcription	Adipose Nuclei	Adipose
50	chr9:104148200-104151200	Weak transcription	Primary B cells from cord blood	blood

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