Variant report

Variant	rs200608936
Chromosome Location	chr10:38772849-38772850
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:25 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427860	chr10:38588021-38818835	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2764202	chr10:38641508-39076221	Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1048953	chr10:38645824-39074038	Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv428230	chr10:38652001-38818835	ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	esv2757379	chr10:38677023-38978680	Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	esv2759744	chr10:38677023-39154935	ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
7	nsv895038	chr10:38678941-38890240	ZNF genes & repeats Active TSS Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	nsv1036840	chr10:38682579-39074038	ZNF genes & repeats Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
9	nsv1052697	chr10:38696664-39030136	Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
10	nsv1043781	chr10:38696664-39074038	ZNF genes & repeats Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
11	nsv895042	chr10:38700234-38775205	Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
12	nsv895043	chr10:38700234-38790428	Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
13	esv2762857	chr10:38733507-39076221	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
14	nsv550422	chr10:38741777-38888745	Bivalent/Poised TSS Active TSS ZNF genes & repeats Weak transcription Enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
15	nsv947861	chr10:38747483-38818835	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
16	nsv550423	chr10:38751950-39154633	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
17	nsv948264	chr10:38760967-38818835	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
18	esv3382895	chr10:38771146-38818835	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
19	esv3325401	chr10:38771246-38818835	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
20	esv3362690	chr10:38771246-38818835	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
21	esv3409840	chr10:38771246-38818835	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
22	esv3433191	chr10:38771246-38818835	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
23	esv3433360	chr10:38771246-38818835	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
24	nsv820427	chr10:38772325-38818622	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
25	esv15082	chr10:38772522-38818622	ZNF genes & repeats Active TSS Weak transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:38772400-38773400	ZNF genes & repeats	Stomach Mucosa	stomach
2	chr10:38772400-38781000	ZNF genes & repeats	HUVEC	blood vessel
3	chr10:38772400-38781200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr10:38772400-38783000	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
5	chr10:38772400-38783200	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr10:38772400-38783400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr10:38772400-38783400	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
8	chr10:38772400-38783400	ZNF genes & repeats	K562	blood
9	chr10:38772400-38785200	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
10	chr10:38772400-38786000	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
11	chr10:38772400-38787000	ZNF genes & repeats	Fetal Heart	heart
12	chr10:38772400-38796600	ZNF genes & repeats	Colon Smooth Muscle	Colon
13	chr10:38772400-38802400	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr10:38772400-38802400	ZNF genes & repeats	Brain Angular Gyrus	brain
15	chr10:38772400-38818800	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
16	chr10:38772400-38818800	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr10:38772400-38818800	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
18	chr10:38772400-38818800	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
19	chr10:38772400-38818800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
20	chr10:38772400-38818800	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
21	chr10:38772400-38818800	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
22	chr10:38772400-38818800	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
23	chr10:38772400-38818800	ZNF genes & repeats	Primary T cells from cord blood	blood
24	chr10:38772400-38818800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
25	chr10:38772400-38818800	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
26	chr10:38772400-38818800	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
27	chr10:38772400-38818800	ZNF genes & repeats	Brain Anterior Caudate	brain
28	chr10:38772400-38818800	ZNF genes & repeats	Brain Hippocampus Middle	brain
29	chr10:38772400-38818800	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
30	chr10:38772400-38818800	ZNF genes & repeats	Brain Substantia Nigra	brain
31	chr10:38772400-38818800	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
32	chr10:38772400-38818800	ZNF genes & repeats	Fetal Brain Male	brain
33	chr10:38772400-38818800	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
34	chr10:38772400-38818800	ZNF genes & repeats	Fetal Lung	lung
35	chr10:38772400-38818800	ZNF genes & repeats	Gastric	stomach
36	chr10:38772400-38818800	ZNF genes & repeats	Rectal Smooth Muscle	rectum
37	chr10:38772400-38818800	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
38	chr10:38772400-38818800	ZNF genes & repeats	Dnd41	blood
39	chr10:38772400-38818800	ZNF genes & repeats	GM12878-XiMat	blood
40	chr10:38772400-38819000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr10:38772400-38819000	ZNF genes & repeats	Adipose Nuclei	Adipose
42	chr10:38772400-38819000	ZNF genes & repeats	Liver	Liver
43	chr10:38772400-38819000	ZNF genes & repeats	Duodenum Mucosa	Duodenum
44	chr10:38772400-38819000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
45	chr10:38772600-38773200	ZNF genes & repeats	NHLF	lung
46	chr10:38772600-38777000	ZNF genes & repeats	Primary B cells from peripheral blood	blood
47	chr10:38772600-38777600	ZNF genes & repeats	Muscle Satellite Cultured Cells	--
48	chr10:38772600-38777800	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
49	chr10:38772600-38781200	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr10:38772600-38783200	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--

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