Variant report

Variant	rs200652983
Chromosome Location	chr3:160219066-160219067
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:160209467..160214464-chr3:160215473..160219309,5	K562	blood:
2	chr3:160209082..160210967-chr3:160217809..160219865,2	K562	blood:
3	chr3:160214963..160217572-chr3:160217602..160219755,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532666	chr3:159777847-160703202	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv1000453	chr3:159853305-160366357	Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	259 gene(s)	inside rSNPs	diseases
3	nsv536779	chr3:159853305-160366357	Strong transcription Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	259 gene(s)	inside rSNPs	diseases
4	esv1800136	chr3:159950498-160278160	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
5	esv1801767	chr3:159950498-160279411	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
6	nsv1008519	chr3:160038710-160292589	Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	255 gene(s)	inside rSNPs	diseases
7	esv1801686	chr3:160089896-160248363	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	211 gene(s)	inside rSNPs	diseases
8	esv1797113	chr3:160217483-160245980	Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
9	nsv963372	chr3:160218056-160219348	Strong transcription Weak transcription ZNF genes & repeats	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160204000-160224000	Weak transcription	Gastric	stomach
2	chr3:160204000-160238200	Weak transcription	Small Intestine	intestine
3	chr3:160204200-160219200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr3:160204200-160219200	Weak transcription	Aorta	Aorta
5	chr3:160204200-160219200	Weak transcription	Left Ventricle	heart
6	chr3:160204200-160219400	Weak transcription	Brain Cingulate Gyrus	brain
7	chr3:160204200-160224400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr3:160204200-160224800	Weak transcription	GM12878-XiMat	blood
9	chr3:160204200-160225400	Weak transcription	Fetal Kidney	kidney
10	chr3:160209200-160219200	Weak transcription	Fetal Stomach	stomach
11	chr3:160210600-160219200	Weak transcription	Fetal Lung	lung
12	chr3:160212000-160220400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr3:160212400-160219200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr3:160213000-160219200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr3:160213000-160220200	Weak transcription	Fetal Intestine Small	intestine
16	chr3:160213000-160228600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr3:160213200-160219200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr3:160213200-160219200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr3:160213200-160222800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
20	chr3:160213400-160219200	Weak transcription	Fetal Muscle Leg	muscle
21	chr3:160213600-160223800	Weak transcription	Psoas Muscle	Psoas
22	chr3:160214000-160219200	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr3:160214600-160219200	Weak transcription	Fetal Brain Female	brain
24	chr3:160214800-160219200	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr3:160214800-160219200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr3:160215000-160219200	Weak transcription	Ovary	ovary
27	chr3:160215000-160225400	Weak transcription	Fetal Heart	heart
28	chr3:160215600-160228200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr3:160215600-160254200	Strong transcription	Monocytes-CD14+_RO01746	blood
30	chr3:160215800-160221800	Strong transcription	Muscle Satellite Cultured Cells	--
31	chr3:160215800-160222800	Strong transcription	Fetal Thymus	thymus
32	chr3:160215800-160223400	Strong transcription	Primary neutrophils fromperipheralblood	blood
33	chr3:160215800-160227400	Strong transcription	Primary B cells from cord blood	blood
34	chr3:160215800-160227800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr3:160215800-160227800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr3:160215800-160227800	Strong transcription	NHDF-Ad	bronchial
37	chr3:160215800-160228200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr3:160215800-160254000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr3:160215800-160254200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr3:160215800-160254200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr3:160216000-160222600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr3:160216000-160227800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
43	chr3:160216000-160227800	Strong transcription	Placenta	Placenta
44	chr3:160216000-160228000	Strong transcription	Duodenum Mucosa	Duodenum
45	chr3:160216000-160254200	Strong transcription	Primary monocytes fromperipheralblood	blood
46	chr3:160216200-160227800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr3:160216200-160227800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
48	chr3:160216200-160227800	Strong transcription	Primary T helper cells fromperipheralblood	blood
49	chr3:160216200-160227800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr3:160216200-160227800	Strong transcription	Adipose Nuclei	Adipose

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links