Variant report

Variant	rs200665479
Chromosome Location	chr11:67250607-67250608
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:27)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:27 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:67249912..67253635-chr11:67270546..67273534,5	K562	blood:
2	chr11:67230145..67233819-chr11:67248914..67252066,4	K562	blood:
3	chr11:67250119..67250751-chr5:43483753..43484361,2	Hela-S3	cervix:
4	chr11:67158455..67160000-chr11:67249177..67251202,2	MCF-7	breast:
5	chr11:67222200..67224356-chr11:67249381..67251101,2	MCF-7	breast:
6	chr11:67230622..67232854-chr11:67248914..67251189,3	MCF-7	breast:
7	chr11:67249113..67250802-chr11:67267518..67269287,2	MCF-7	breast:
8	chr11:67231198..67233116-chr11:67249356..67252066,3	K562	blood:
9	chr11:67138872..67142169-chr11:67249496..67254071,4	MCF-7	breast:
10	chr11:67205296..67207654-chr11:67248873..67250891,2	MCF-7	breast:
11	chr11:67204772..67206774-chr11:67250564..67253520,2	K562	blood:
12	chr11:67187290..67189722-chr11:67250373..67251986,2	K562	blood:
13	chr11:67171679..67173695-chr11:67249098..67251684,2	MCF-7	breast:
14	chr11:67168541..67170644-chr11:67250058..67251865,2	MCF-7	breast:
15	chr11:67121864..67124508-chr11:67250272..67251792,2	K562	blood:
16	chr11:67201373..67203481-chr11:67248801..67250929,2	MCF-7	breast:
17	chr11:67247191..67252288-chr11:67270350..67277699,12	MCF-7	breast:
18	chr11:67167204..67171216-chr11:67247088..67251861,5	K562	blood:
19	chr11:67234942..67238660-chr11:67246245..67252394,7	MCF-7	breast:
20	chr11:67174480..67177168-chr11:67249396..67252040,3	MCF-7	breast:
21	chr11:67169616..67172754-chr11:67249059..67251001,3	MCF-7	breast:
22	chr11:67250117..67252279-chr11:67255664..67259072,3	MCF-7	breast:
23	chr11:67250506..67252570-chr11:67374037..67375559,2	K562	blood:
24	chr11:67249840..67250624-chr21:40177263..40178201,2	Hela-S3	cervix:
25	chr11:67167204..67172690-chr11:67247088..67251861,6	K562	blood:
26	chr11:67235776..67238484-chr11:67248509..67251813,3	K562	blood:
27	chr11:67249454..67253550-chr11:67271231..67274487,6	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000175463	Chromatin interaction
ENSG00000151881	Chromatin interaction
ENSG00000110711	Chromatin interaction
ENSG00000167792	Chromatin interaction
ENSG00000256514	Chromatin interaction
ENSG00000175544	Chromatin interaction
ENSG00000175505	Chromatin interaction
ENSG00000175482	Chromatin interaction
ENSG00000172613	Chromatin interaction
ENSG00000184224	Chromatin interaction
ENSG00000172508	Chromatin interaction
ENSG00000172663	Chromatin interaction
ENSG00000255949	Chromatin interaction
ENSG00000167797	Chromatin interaction
ENSG00000110697	Chromatin interaction
ENSG00000213402	Chromatin interaction
ENSG00000172531	Chromatin interaction
ENSG00000249492	Chromatin interaction
ENSG00000157557	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:24 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531397	chr11:66653381-67465721	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv897797	chr11:67023040-67293234	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	206 gene(s)	inside rSNPs	diseases
3	nsv1043037	chr11:67027193-67357425	Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
4	nsv897801	chr11:67033076-67432479	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	236 gene(s)	inside rSNPs	diseases
5	nsv1048230	chr11:67058231-67252397	Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	146 gene(s)	inside rSNPs	diseases
6	nsv1039205	chr11:67135246-67252397	Enhancers Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	122 gene(s)	inside rSNPs	diseases
7	esv1818769	chr11:67138811-67300457	Flanking Active TSS Active TSS Genic enhancers Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	167 gene(s)	inside rSNPs	diseases
8	esv1798859	chr11:67139954-67272983	Active TSS Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	154 gene(s)	inside rSNPs	diseases
9	nsv897805	chr11:67155210-67283891	ZNF genes & repeats Flanking Active TSS Genic enhancers Enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	148 gene(s)	inside rSNPs	diseases
10	nsv897806	chr11:67155210-67294308	Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	148 gene(s)	inside rSNPs	diseases
11	nsv897807	chr11:67155210-67414492	Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	176 gene(s)	inside rSNPs	diseases
12	nsv897808	chr11:67155210-67419855	Flanking Active TSS Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	176 gene(s)	inside rSNPs	diseases
13	nsv897809	chr11:67156875-67276235	Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Weak transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	148 gene(s)	inside rSNPs	diseases
14	nsv555254	chr11:67164495-67288594	Weak transcription Flanking Active TSS Active TSS Genic enhancers Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	146 gene(s)	inside rSNPs	diseases
15	nsv534229	chr11:67164667-67411909	Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	175 gene(s)	inside rSNPs	diseases
16	nsv897813	chr11:67175692-67283891	Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	132 gene(s)	inside rSNPs	diseases
17	nsv521723	chr11:67175692-67311258	Bivalent/Poised TSS Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	132 gene(s)	inside rSNPs	diseases
18	nsv468604	chr11:67186000-67283891	Active TSS Strong transcription Bivalent/Poised TSS Weak transcription Genic enhancers Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	132 gene(s)	inside rSNPs	diseases
19	nsv555256	chr11:67186000-67283891	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	132 gene(s)	inside rSNPs	diseases
20	nsv527056	chr11:67207426-67294308	Genic enhancers Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	115 gene(s)	inside rSNPs	diseases
21	nsv983155	chr11:67220251-67251432	Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	56 gene(s)	inside rSNPs	diseases
22	esv2422195	chr11:67234322-67626901	Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	146 gene(s)	inside rSNPs	diseases
23	nsv825960	chr11:67238644-67250833	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	28 gene(s)	inside rSNPs	diseases
24	nsv1067892	chr11:67249418-67255234	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:67249200-67250800	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr11:67249800-67250800	Active TSS	Breast Myoepithelial Primary Cells	Breast
3	chr11:67249800-67250800	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
4	chr11:67249800-67250800	Active TSS	Primary T killer naive cells fromperipheralblood	blood
5	chr11:67249800-67250800	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr11:67249800-67250800	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr11:67249800-67250800	Active TSS	Brain Hippocampus Middle	brain
8	chr11:67249800-67250800	Active TSS	Colonic Mucosa	Colon
9	chr11:67249800-67250800	Active TSS	Duodenum Smooth Muscle	Duodenum
10	chr11:67249800-67250800	Active TSS	Esophagus	oesophagus
11	chr11:67249800-67250800	Active TSS	Fetal Intestine Large	intestine
12	chr11:67249800-67250800	Active TSS	Fetal Intestine Small	intestine
13	chr11:67249800-67250800	Active TSS	Psoas Muscle	Psoas
14	chr11:67249800-67250800	Active TSS	Rectal Mucosa Donor 29	rectum
15	chr11:67249800-67250800	Active TSS	Rectal Smooth Muscle	rectum
16	chr11:67249800-67250800	Active TSS	Right Atrium	heart
17	chr11:67249800-67250800	Active TSS	NHDF-Ad	bronchial
18	chr11:67249800-67250800	Active TSS	NHEK	skin
19	chr11:67249800-67250800	Active TSS	NHLF	lung
20	chr11:67249800-67251000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr11:67249800-67251000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr11:67249800-67251000	Active TSS	Brain Anterior Caudate	brain
23	chr11:67249800-67251000	Active TSS	Brain Inferior Temporal Lobe	brain
24	chr11:67249800-67251000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
25	chr11:67249800-67251000	Active TSS	Fetal Brain Female	brain
26	chr11:67249800-67251000	Active TSS	Pancreatic Islets	Pancreatic Islet
27	chr11:67249800-67251200	Active TSS	Brain Germinal Matrix	brain
28	chr11:67249800-67251400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr11:67249800-67251400	Active TSS	A549	lung
30	chr11:67249800-67251400	Active TSS	HSMM	muscle
31	chr11:67249800-67251600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr11:67249800-67251600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
33	chr11:67250000-67250800	Active TSS	Muscle Satellite Cultured Cells	--
34	chr11:67250000-67250800	Active TSS	Fetal Heart	heart
35	chr11:67250000-67250800	Active TSS	Fetal Stomach	stomach
36	chr11:67250000-67250800	Active TSS	Ovary	ovary
37	chr11:67250000-67250800	Active TSS	Right Ventricle	heart
38	chr11:67250000-67250800	Active TSS	Sigmoid Colon	Sigmoid Colon
39	chr11:67250000-67250800	Active TSS	NH-A	brain
40	chr11:67250000-67251000	Active TSS	ES-I3 Cell Line	embryonic stem cell
41	chr11:67250000-67251000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr11:67250000-67251000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr11:67250000-67251000	Flanking Active TSS	Primary hematopoietic stem cells	blood
44	chr11:67250000-67251000	Active TSS	Primary T killer memory cells from peripheral blood	blood
45	chr11:67250000-67251000	Active TSS	Brain Angular Gyrus	brain
46	chr11:67250000-67251000	Active TSS	Brain Substantia Nigra	brain
47	chr11:67250000-67251000	Active TSS	Colon Smooth Muscle	Colon
48	chr11:67250000-67251000	Active TSS	HSMMtube	muscle
49	chr11:67250000-67251200	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr11:67250000-67251200	Active TSS	HUES64 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links