Variant report

Variant	rs200668424
Chromosome Location	chr4:56773449-56773450
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755990	chr4:56317136-57143037	Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv10496	chr4:56336946-56841137	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
3	nsv1005845	chr4:56522075-56980357	Active TSS Bivalent Enhancer Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	esv3406311	chr4:56580578-56840877	ZNF genes & repeats Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
5	nsv427681	chr4:56651921-56908209	Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
6	nsv879024	chr4:56742205-56786589	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
7	nsv879025	chr4:56742205-56808607	Enhancers Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	esv3492848	chr4:56770810-56775264	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	esv3492849	chr4:56770810-56775264	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	esv3433210	chr4:56772961-56773560	Weak transcription Enhancers Flanking Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:56721600-56774600	Weak transcription	Fetal Heart	heart
2	chr4:56737000-56774800	Weak transcription	Psoas Muscle	Psoas
3	chr4:56748600-56776800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr4:56751400-56776200	Weak transcription	A549	lung
5	chr4:56759800-56774200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr4:56760200-56773600	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr4:56760400-56773600	Weak transcription	Pancreas	Pancrea
8	chr4:56760400-56774400	Weak transcription	Fetal Brain Male	brain
9	chr4:56760400-56775000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr4:56762200-56776600	Weak transcription	Osteobl	bone
11	chr4:56762400-56773600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr4:56764400-56773600	Weak transcription	Colon Smooth Muscle	Colon
13	chr4:56766800-56786800	Weak transcription	Ovary	ovary
14	chr4:56767400-56776200	Weak transcription	NHDF-Ad	bronchial
15	chr4:56769000-56774800	Weak transcription	Fetal Lung	lung
16	chr4:56769200-56773600	Weak transcription	HSMMtube	muscle
17	chr4:56770200-56774800	Weak transcription	GM12878-XiMat	blood
18	chr4:56770800-56773600	Weak transcription	Brain Substantia Nigra	brain
19	chr4:56770800-56777800	Weak transcription	Primary T cells fromperipheralblood	blood
20	chr4:56771000-56773800	Weak transcription	Primary B cells from peripheral blood	blood
21	chr4:56771000-56779800	Weak transcription	Brain Hippocampus Middle	brain
22	chr4:56771200-56773800	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr4:56771400-56773600	Weak transcription	Primary hematopoietic stem cells	blood
24	chr4:56772000-56773600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr4:56772000-56773600	Weak transcription	Fetal Brain Female	brain
26	chr4:56772000-56774000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr4:56772000-56774200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr4:56772000-56774200	Weak transcription	Fetal Thymus	thymus
29	chr4:56772000-56774600	Weak transcription	Duodenum Mucosa	Duodenum
30	chr4:56772000-56786600	Weak transcription	Skeletal Muscle Female	skeletal muscle
31	chr4:56772200-56774000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr4:56772200-56774000	Enhancers	Hela-S3	cervix
33	chr4:56772200-56775000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr4:56772200-56776400	Weak transcription	HSMM	muscle
35	chr4:56772400-56773800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
36	chr4:56772400-56774000	Weak transcription	Fetal Intestine Small	intestine
37	chr4:56772400-56774000	Weak transcription	Fetal Muscle Trunk	muscle
38	chr4:56772400-56774400	Weak transcription	Fetal Muscle Leg	muscle
39	chr4:56772600-56774200	Weak transcription	Fetal Stomach	stomach
40	chr4:56772600-56774400	Weak transcription	Fetal Intestine Large	intestine
41	chr4:56772600-56784800	Weak transcription	Primary T cells from cord blood	blood
42	chr4:56772800-56773600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
43	chr4:56772800-56773600	Weak transcription	Liver	Liver
44	chr4:56772800-56773800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr4:56772800-56773800	Weak transcription	Duodenum Smooth Muscle	Duodenum
46	chr4:56772800-56773800	Enhancers	HMEC	breast
47	chr4:56772800-56773800	Enhancers	NHEK	skin
48	chr4:56772800-56774600	Weak transcription	Cortex derived primary cultured neurospheres	brain
49	chr4:56772800-56774800	Weak transcription	Placenta	Placenta
50	chr4:56772800-56776600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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