Variant report

Variant	rs200674716
Chromosome Location	chr4:15667639-15667640
allele	-/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:15667185..15670762-chr4:15673659..15675755,3	K562	blood:
2	chr4:15655910..15661308-chr4:15665213..15668611,5	K562	blood:
3	chr4:15659405..15662406-chr4:15663977..15668803,5	MCF-7	breast:
4	chr4:15666992..15669093-chr4:15681918..15684119,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000118564	Chromatin interaction
ENSG00000237765	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3448986	chr4:14928802-15805558	Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	esv2757923	chr4:15444617-15749520	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	esv2759227	chr4:15444617-15749520	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv428439	chr4:15556961-15749520	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
5	nsv1012988	chr4:15597510-16091527	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
6	nsv518830	chr4:15610771-15672200	Flanking Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	nsv521183	chr4:15610771-15692136	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
8	esv3361772	chr4:15666732-15684418	Transcr. at gene 5' and 3' Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15657600-15681400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr4:15657800-15667800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr4:15658000-15667800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr4:15658000-15672200	Weak transcription	Fetal Muscle Trunk	muscle
5	chr4:15658000-15673800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr4:15658000-15675200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr4:15658000-15679000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr4:15658000-15681400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr4:15658200-15667800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr4:15658200-15667800	Weak transcription	NHLF	lung
11	chr4:15658200-15668000	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr4:15658200-15670600	Weak transcription	Brain Cingulate Gyrus	brain
13	chr4:15658200-15679200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr4:15658200-15679200	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr4:15658200-15682200	Weak transcription	Fetal Stomach	stomach
16	chr4:15658400-15668400	Weak transcription	Dnd41	blood
17	chr4:15658400-15668600	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr4:15658600-15673000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr4:15658600-15679000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr4:15659600-15668200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr4:15659800-15678600	Weak transcription	K562	blood
22	chr4:15660000-15668600	Weak transcription	HepG2	liver
23	chr4:15660200-15670600	Weak transcription	Fetal Lung	lung
24	chr4:15660400-15679200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr4:15661200-15668000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr4:15661600-15668400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr4:15661600-15668800	Enhancers	Primary monocytes fromperipheralblood	blood
28	chr4:15661600-15678600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr4:15662000-15668200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr4:15662200-15668600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr4:15662400-15678800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr4:15663200-15668400	Weak transcription	HUES6 Cell Line	embryonic stem cell
33	chr4:15664800-15681800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
34	chr4:15665200-15668400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
35	chr4:15665800-15667800	Enhancers	NHEK	skin
36	chr4:15665800-15669000	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr4:15666400-15668600	Genic enhancers	HMEC	breast
38	chr4:15666600-15668200	Enhancers	Placenta	Placenta
39	chr4:15666600-15668600	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr4:15666600-15668600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
41	chr4:15666600-15668600	Enhancers	Primary hematopoietic stem cells short term culture	blood
42	chr4:15666600-15668800	Enhancers	Hela-S3	cervix
43	chr4:15666600-15669000	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr4:15666600-15669400	Enhancers	HUVEC	blood vessel
45	chr4:15666800-15668400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
46	chr4:15666800-15668400	Strong transcription	Cortex derived primary cultured neurospheres	brain
47	chr4:15666800-15669600	Strong transcription	Thymus	Thymus
48	chr4:15666800-15670200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr4:15667000-15668000	Weak transcription	Sigmoid Colon	Sigmoid Colon
50	chr4:15667000-15668200	Enhancers	Adipose Nuclei	Adipose

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