Variant report

Variant	rs200715195
Chromosome Location	chr10:99531301-99531302
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:99526747..99528824-chr10:99529529..99531423,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817777	chr10:99196035-99558169	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv467441	chr10:99472710-99541104	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv552026	chr10:99472710-99541104	Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	esv3340017	chr10:99530387-99533135	Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
5	esv3390726	chr10:99530862-99532860	Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99529600-99531400	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
2	chr10:99530000-99531400	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
3	chr10:99530200-99532200	Bivalent/Poised TSS	Duodenum Mucosa	Duodenum
4	chr10:99530400-99531400	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
5	chr10:99530400-99531400	Bivalent Enhancer	Primary B cells from peripheral blood	blood
6	chr10:99530400-99531400	Bivalent Enhancer	Fetal Brain Male	brain
7	chr10:99530400-99531400	Flanking Active TSS	Pancreas	Pancrea
8	chr10:99530400-99532200	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
9	chr10:99530600-99531400	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr10:99530600-99531400	Flanking Bivalent TSS/Enh	ES-UCSF4 Cell Line	embryonic stem cell
11	chr10:99530600-99531400	Bivalent/Poised TSS	Primary T cells from cord blood	blood
12	chr10:99530600-99531400	Flanking Bivalent TSS/Enh	Primary T helper naive cells fromperipheralblood	blood
13	chr10:99530600-99531400	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr10:99530600-99531400	Bivalent/Poised TSS	Brain Anterior Caudate	brain
15	chr10:99530600-99531600	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
16	chr10:99530600-99531600	Bivalent/Poised TSS	HSMM	muscle
17	chr10:99530600-99532000	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
18	chr10:99530600-99532000	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
19	chr10:99530600-99532200	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
20	chr10:99530600-99532200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
21	chr10:99530800-99531400	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr10:99530800-99531400	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
23	chr10:99530800-99531400	Flanking Bivalent TSS/Enh	Brain Hippocampus Middle	brain
24	chr10:99530800-99531400	Flanking Bivalent TSS/Enh	Brain Dorsolateral Prefrontal Cortex	brain
25	chr10:99530800-99531400	Transcr. at gene 5' and 3'	Right Atrium	heart
26	chr10:99530800-99531400	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
27	chr10:99530800-99531600	Bivalent/Poised TSS	Fetal Intestine Large	intestine
28	chr10:99530800-99531600	Bivalent/Poised TSS	HSMMtube	muscle
29	chr10:99530800-99532000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
30	chr10:99530800-99532000	Active TSS	Brain Angular Gyrus	brain
31	chr10:99530800-99532000	Bivalent/Poised TSS	Fetal Intestine Small	intestine
32	chr10:99530800-99532000	Active TSS	Pancreatic Islets	Pancreatic Islet
33	chr10:99530800-99532000	Bivalent/Poised TSS	Psoas Muscle	Psoas
34	chr10:99530800-99532000	Bivalent Enhancer	Spleen	Spleen
35	chr10:99530800-99532200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
36	chr10:99530800-99532200	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
37	chr10:99530800-99532200	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr10:99530800-99532200	Bivalent/Poised TSS	Fetal Brain Female	brain
39	chr10:99530800-99532400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
40	chr10:99530800-99532400	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
41	chr10:99531000-99531400	Bivalent Enhancer	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr10:99531000-99531400	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr10:99531000-99531400	Flanking Bivalent TSS/Enh	Primary T helper cells fromperipheralblood	blood
44	chr10:99531000-99531400	Flanking Bivalent TSS/Enh	Primary T regulatory cells fromperipheralblood	blood
45	chr10:99531000-99531400	Flanking Bivalent TSS/Enh	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr10:99531000-99531400	Flanking Bivalent TSS/Enh	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr10:99531000-99531400	Flanking Bivalent TSS/Enh	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr10:99531000-99531400	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr10:99531000-99531400	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr10:99531000-99531400	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin01	Skin

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