Variant report

Variant rs200725670
Chromosome Location chr7:27168927-27168928
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:53 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr7:27146400-27169600 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
2 chr7:27152800-27169400 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
3 chr7:27155600-27169400 Weak transcription Hela-S3 cervix
4 chr7:27156200-27169200 Weak transcription Osteobl bone
5 chr7:27162200-27169000 Weak transcription NHEK skin
6 chr7:27162600-27169000 Weak transcription Muscle Satellite Cultured Cells --
7 chr7:27162600-27169000 Weak transcription Aorta Aorta
8 chr7:27162800-27169600 Flanking Active TSS Stomach Smooth Muscle stomach
9 chr7:27163200-27170600 Strong transcription Primary hematopoietic stem cells short term culture blood
10 chr7:27164200-27169600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
11 chr7:27164400-27169200 Weak transcription NHDF-Ad bronchial
12 chr7:27164600-27169000 Enhancers Fetal Adrenal Gland Adrenal Gland
13 chr7:27164600-27169400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
14 chr7:27164600-27169400 Weak transcription HMEC breast
15 chr7:27165000-27169000 Enhancers HepG2 liver
16 chr7:27165600-27169200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
17 chr7:27167000-27169400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
18 chr7:27167600-27169000 Genic enhancers HUVEC blood vessel
19 chr7:27167800-27169000 Genic enhancers Rectal Mucosa Donor 31 rectum
20 chr7:27167800-27171000 Active TSS Duodenum Smooth Muscle Duodenum
21 chr7:27168000-27169000 Genic enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
22 chr7:27168000-27169000 Enhancers Adipose Nuclei Adipose
23 chr7:27168000-27169000 Enhancers Skeletal Muscle Male skeletal muscle
24 chr7:27168000-27169000 Weak transcription Stomach Mucosa stomach
25 chr7:27168000-27169000 Enhancers NHLF lung
26 chr7:27168000-27169400 Weak transcription HSMMtube muscle
27 chr7:27168200-27169000 Genic enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
28 chr7:27168200-27169000 Flanking Bivalent TSS/Enh Fetal Lung lung
29 chr7:27168400-27169000 Active TSS Duodenum Mucosa Duodenum
30 chr7:27168400-27169000 Enhancers Fetal Muscle Trunk muscle
31 chr7:27168400-27169200 Transcr. at gene 5' and 3' Fetal Stomach stomach
32 chr7:27168400-27169200 Genic enhancers Sigmoid Colon Sigmoid Colon
33 chr7:27168400-27169600 Flanking Active TSS Rectal Smooth Muscle rectum
34 chr7:27168400-27169600 Enhancers Spleen Spleen
35 chr7:27168400-27169800 Transcr. at gene 5' and 3' Fetal Intestine Small intestine
36 chr7:27168400-27169800 Flanking Active TSS Skeletal Muscle Female skeletal muscle
37 chr7:27168600-27169200 Flanking Active TSS Breast Myoepithelial Primary Cells Breast
38 chr7:27168600-27169200 Weak transcription Primary hematopoietic stem cells blood
39 chr7:27168600-27169200 Enhancers A549 lung
40 chr7:27168800-27169000 Enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
41 chr7:27168800-27169000 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
42 chr7:27168800-27169200 Transcr. at gene 5' and 3' IMR90 fetal lung fibroblasts Cell Line lung
43 chr7:27168800-27169200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
44 chr7:27168800-27169200 Enhancers Colon Smooth Muscle Colon
45 chr7:27168800-27169200 Transcr. at gene 5' and 3' Fetal Muscle Leg muscle
46 chr7:27168800-27169200 Flanking Active TSS Rectal Mucosa Donor 29 rectum
47 chr7:27168800-27169400 Flanking Active TSS Psoas Muscle Psoas
48 chr7:27168800-27169600 Flanking Active TSS Fetal Intestine Large intestine
49 chr7:27168800-27169800 Flanking Active TSS Colonic Mucosa Colon
50 chr7:27168800-27170800 Active TSS Esophagus oesophagus

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