Variant report

Variant	rs200747746
Chromosome Location	chr11:65904505-65904506
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:65875746..65878415-chr11:65902728..65904507,2	MCF-7	breast:
2	chr11:65833892..65843127-chr11:65900837..65907449,12	MCF-7	breast:
3	chr11:65769464..65771384-chr11:65902073..65904994,3	MCF-7	breast:
4	chr11:65849116..65851691-chr11:65904500..65906481,2	MCF-7	breast:
5	chr11:65834370..65841898-chr11:65897925..65905090,13	MCF-7	breast:
6	chr11:65903374..65906187-chr11:65918523..65921297,2	MCF-7	breast:
7	chr11:65899561..65902107-chr11:65903112..65905957,2	MCF-7	breast:
8	chr11:65899578..65902503-chr11:65902811..65904748,2	K562	blood:
9	chr11:65901646..65904631-chr11:65908270..65911227,4	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000175115	Chromatin interaction
ENSG00000175334	Chromatin interaction
ENSG00000238763	Chromatin interaction
ENSG00000175376	Chromatin interaction
ENSG00000255038	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948711	chr11:65692760-65949674	Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	65 gene(s)	inside rSNPs	diseases
2	esv3335923	chr11:65741698-66175759	Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	117 gene(s)	inside rSNPs	diseases
3	esv1819302	chr11:65787660-66007018	Active TSS Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
4	esv3407551	chr11:65794503-66158322	Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	103 gene(s)	inside rSNPs	diseases
5	esv3462263	chr11:65903488-65904839	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
6	esv3462252	chr11:65903518-65904833	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
7	esv3462241	chr11:65903554-65904823	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
8	esv3462274	chr11:65903665-65904726	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
9	esv2180444	chr11:65904505-65904506	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:65880400-65905000	Weak transcription	Fetal Stomach	stomach
2	chr11:65888400-65909800	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr11:65894400-65904600	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr11:65894400-65909000	Weak transcription	K562	blood
5	chr11:65894800-65912200	Weak transcription	Thymus	Thymus
6	chr11:65895000-65909200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr11:65895000-65913800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr11:65895000-65917600	Weak transcription	HSMM	muscle
9	chr11:65895200-65904600	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr11:65895200-65905000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr11:65895200-65905000	Weak transcription	Fetal Muscle Leg	muscle
12	chr11:65895200-65905000	Weak transcription	Right Ventricle	heart
13	chr11:65895200-65907600	Weak transcription	Pancreas	Pancrea
14	chr11:65895200-65912200	Weak transcription	Lung	lung
15	chr11:65895200-65913000	Weak transcription	Psoas Muscle	Psoas
16	chr11:65895400-65905000	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr11:65895400-65909400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr11:65895400-65910200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr11:65895600-65909400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr11:65895600-65909800	Weak transcription	NHEK	skin
21	chr11:65896600-65907800	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr11:65896600-65912800	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr11:65898400-65913000	Weak transcription	Spleen	Spleen
24	chr11:65900000-65907200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
25	chr11:65900000-65909800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
26	chr11:65900800-65905000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
27	chr11:65901000-65919400	Weak transcription	Fetal Muscle Trunk	muscle
28	chr11:65901200-65904800	Weak transcription	Fetal Heart	heart
29	chr11:65901200-65905000	Weak transcription	Primary T helper cells fromperipheralblood	blood
30	chr11:65901200-65905000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr11:65901200-65905000	Weak transcription	Left Ventricle	heart
32	chr11:65901200-65905000	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr11:65901200-65909800	Weak transcription	Primary hematopoietic stem cells	blood
34	chr11:65901200-65910800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
35	chr11:65901600-65905400	Weak transcription	Primary B cells from cord blood	blood
36	chr11:65901800-65905000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr11:65902000-65912800	Weak transcription	Right Atrium	heart
38	chr11:65902200-65905000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr11:65902200-65906000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr11:65902200-65909600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr11:65902200-65910400	Weak transcription	HUES48 Cell Line	embryonic stem cell
42	chr11:65902400-65904600	Weak transcription	Fetal Brain Female	brain
43	chr11:65902600-65904600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
44	chr11:65902600-65904800	Weak transcription	Primary B cells from peripheral blood	blood
45	chr11:65902600-65905000	Weak transcription	Primary T cells fromperipheralblood	blood
46	chr11:65902600-65907000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
47	chr11:65902800-65905200	Flanking Active TSS	GM12878-XiMat	blood
48	chr11:65902800-65907400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
49	chr11:65903000-65905400	Enhancers	NHLF	lung
50	chr11:65903200-65905000	Weak transcription	Ovary	ovary

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