Variant report

Variant	rs200756232
Chromosome Location	chr18:14531951-14531952
allele	-/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUN	chr18:14531801-14532001	HepG2	liver:	n/a	chr18:14531841-14531848 chr18:14531839-14531851 chr18:14531841-14531850 chr18:14531808-14531820 chr18:14531810-14531818 chr18:14531809-14531818 chr18:14531841-14531849 chr18:14531811-14531818
2	STAT3	chr18:14531759-14531996	MCF10A-Er-Src	breast:	n/a	chr18:14531809-14531818 chr18:14531841-14531850 chr18:14531840-14531849 chr18:14531872-14531886 chr18:14531810-14531819
3	FOS	chr18:14531635-14532007	MCF10A-Er-Src	breast:	n/a	chr18:14531841-14531848 chr18:14531839-14531851 chr18:14531841-14531850 chr18:14531808-14531820 chr18:14531810-14531818 chr18:14531809-14531818 chr18:14531841-14531849 chr18:14531811-14531818
4	STAT3	chr18:14531803-14531993	MCF10A-Er-Src	breast:	n/a	chr18:14531809-14531818 chr18:14531841-14531850 chr18:14531840-14531849 chr18:14531872-14531886 chr18:14531810-14531819
5	FOS	chr18:14531641-14532006	MCF10A-Er-Src	breast:	n/a	chr18:14531841-14531848 chr18:14531839-14531851 chr18:14531841-14531850 chr18:14531808-14531820 chr18:14531810-14531818 chr18:14531809-14531818 chr18:14531841-14531849 chr18:14531811-14531818
6	JUND	chr18:14531774-14531999	HepG2	liver:	n/a	chr18:14531841-14531848 chr18:14531839-14531851 chr18:14531841-14531850 chr18:14531808-14531820 chr18:14531810-14531818 chr18:14531809-14531818 chr18:14531808-14531819 chr18:14531839-14531850 chr18:14531841-14531849 chr18:14531811-14531818
7	STAT3	chr18:14531768-14532005	MCF10A-Er-Src	breast:	n/a	chr18:14531809-14531818 chr18:14531841-14531850 chr18:14531840-14531849 chr18:14531872-14531886 chr18:14531810-14531819
8	BACH1	chr18:14531777-14531973	K562	blood:	n/a	chr18:14531838-14531852 chr18:14531807-14531821
9	FOS	chr18:14531648-14532007	MCF10A-Er-Src	breast:	n/a	chr18:14531841-14531848 chr18:14531839-14531851 chr18:14531841-14531850 chr18:14531808-14531820 chr18:14531810-14531818 chr18:14531809-14531818 chr18:14531841-14531849 chr18:14531811-14531818
10	FOS	chr18:14531642-14532015	MCF10A-Er-Src	breast:	n/a	chr18:14531841-14531848 chr18:14531839-14531851 chr18:14531841-14531850 chr18:14531808-14531820 chr18:14531810-14531818 chr18:14531809-14531818 chr18:14531841-14531849 chr18:14531811-14531818

Variant related genes	Relation type
RNU6-1021P	TF binding region

Extended variants
information (count: 27 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:27 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431972	chr18:13804043-14753900	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
2	nsv428006	chr18:14087067-14874733	Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	36 gene(s)	inside rSNPs	diseases
3	nsv576531	chr18:14105923-14540310	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	esv2757670	chr18:14208563-14558050	Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv916419	chr18:14418522-15165372	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
6	esv1830864	chr18:14419817-14560183	Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island lncRNA	5 gene(s)	inside rSNPs	diseases
7	esv1828427	chr18:14430015-14560355	Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island lncRNA	5 gene(s)	inside rSNPs	diseases
8	esv1830968	chr18:14430215-14543123	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island lncRNA	4 gene(s)	inside rSNPs	diseases
9	esv1828368	chr18:14430215-14560155	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island lncRNA	5 gene(s)	inside rSNPs	diseases
10	esv16841	chr18:14431322-14599321	Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island lncRNA	6 gene(s)	inside rSNPs	diseases
11	esv1832994	chr18:14431387-14560355	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island lncRNA	5 gene(s)	inside rSNPs	diseases
12	esv1793307	chr18:14431679-14550021	Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island lncRNA	5 gene(s)	inside rSNPs	diseases
13	esv1844581	chr18:14431679-14560155	Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island lncRNA	5 gene(s)	inside rSNPs	diseases
14	nsv833593	chr18:14432183-14609021	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island lncRNA	7 gene(s)	inside rSNPs	diseases
15	nsv9615	chr18:14441576-14609353	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island lncRNA	7 gene(s)	inside rSNPs	diseases
16	nsv978611	chr18:14463169-14542344	Weak transcription Enhancers Flanking Active TSS	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
17	esv1796331	chr18:14463225-14560155	Weak transcription Enhancers Flanking Active TSS	TF binding region CpG island lncRNA	4 gene(s)	inside rSNPs	diseases
18	nsv909427	chr18:14473743-14542648	Weak transcription Enhancers	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
19	nsv909428	chr18:14473743-14548204	Enhancers Weak transcription	TF binding region CpG island lncRNA	4 gene(s)	inside rSNPs	diseases
20	nsv514861	chr18:14477547-14594525	Weak transcription Enhancers ZNF genes & repeats	TF binding region CpG island lncRNA	5 gene(s)	inside rSNPs	diseases
21	nsv909429	chr18:14524300-14603859	Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
22	nsv909430	chr18:14524300-14628542	Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island lncRNA	4 gene(s)	inside rSNPs	diseases
23	nsv909431	chr18:14524300-14751049	Enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
24	nsv909432	chr18:14526439-14590752	Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
25	esv3433768	chr18:14528452-14534850	Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
26	esv3344660	chr18:14528552-14534450	Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases
27	esv3401517	chr18:14529752-14533450	Enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:14531400-14532200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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