Variant report

Variant	rs200756242
Chromosome Location	chr8:103995523-103995524
allele	-/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:103987556..103990076-chr8:103994687..103996398,2	K562	blood:
2	chr8:103984545..103986132-chr8:103993005..103995689,2	MCF-7	breast:
3	chr8:103876107..103878038-chr8:103994980..103997604,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000253320	Chromatin interaction
ENSG00000155096	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:40 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33118	chr8:103358567-104068172	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	esv3479710	chr8:103993376-103998574	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	esv3424698	chr8:103993626-103997924	Weak transcription Enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv824699	chr8:103993689-103998885	Weak transcription Enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	esv3366496	chr8:103994001-103997724	Weak transcription Enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	esv3499269	chr8:103994285-103996667	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	esv3499270	chr8:103994285-103996667	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	esv3479711	chr8:103994325-103997079	Weak transcription Enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
9	nsv820937	chr8:103994366-103996985	Weak transcription Enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
10	esv3479712	chr8:103994628-103996704	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	esv3329747	chr8:103994659-103996690	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
12	esv3499666	chr8:103994663-103996693	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
13	esv3479709	chr8:103994672-103996630	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
14	esv3499668	chr8:103994678-103996650	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
15	esv3479708	chr8:103994682-103996672	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
16	esv3499669	chr8:103994708-103996632	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
17	esv3499667	chr8:103994710-103996645	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
18	nsv515052	chr8:103994728-103996520	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
19	esv3479713	chr8:103994755-103996600	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
20	esv20735	chr8:103994756-103996586	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
21	esv3499670	chr8:103994765-103996601	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
22	esv3479714	chr8:103994769-103996599	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
23	esv3499671	chr8:103994769-103996599	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
24	nsv611824	chr8:103994775-103995896	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
25	nsv611825	chr8:103994775-103996239	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
26	nsv611826	chr8:103994775-103996410	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
27	esv1834276	chr8:103994775-103996519	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
28	esv1834884	chr8:103994775-103996519	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
29	esv1835810	chr8:103994775-103996519	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
30	esv1836453	chr8:103994775-103996519	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
31	esv1837224	chr8:103994775-103996519	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
32	esv1837244	chr8:103994775-103996519	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
33	esv1838116	chr8:103994775-103996519	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
34	esv1839429	chr8:103994775-103996519	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
35	esv1840666	chr8:103994775-103996519	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
36	esv1841752	chr8:103994775-103996519	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
37	nsv611827	chr8:103994775-103996519	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
38	nsv611828	chr8:103994826-103995896	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
39	nsv611829	chr8:103995371-103996519	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
40	nsv611830	chr8:103995474-103996519	Enhancers Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:103990400-104011400	Weak transcription	Placenta	Placenta
2	chr8:103991200-103995800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr8:103992800-103995800	Weak transcription	Primary hematopoietic stem cells	blood
4	chr8:103993200-103995800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr8:103993400-104012400	Weak transcription	Spleen	Spleen
6	chr8:103993600-103995800	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr8:103993800-103995600	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr8:103993800-103995600	Weak transcription	Primary B cells from cord blood	blood
9	chr8:103994800-103999200	Enhancers	Primary B cells from peripheral blood	blood
10	chr8:103995200-103996400	Enhancers	Primary monocytes fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links