Variant report

Variant	rs200779342
Chromosome Location	chr14:36988599-36988600
allele	-/A
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PAX9-3	chr14:36988483-36988884	ENSG00000253563.2

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040256	chr14:36501452-37172046	Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
2	nsv542040	chr14:36501452-37172046	Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
3	nsv1047290	chr14:36564568-37445157	Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	43 gene(s)	inside rSNPs	diseases
4	nsv1037952	chr14:36670484-37294692	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
5	nsv542042	chr14:36670484-37294692	Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
6	nsv1053685	chr14:36915643-37245920	Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
7	nsv917279	chr14:36953511-37146655	Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
8	esv15094	chr14:36986331-36990958	Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv564346	chr14:36988010-36989849	Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:36981400-36991200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
2	chr14:36986400-36988600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
3	chr14:36986400-36989000	Bivalent Enhancer	Liver	Liver
4	chr14:36986400-36989200	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr14:36986400-36989800	Enhancers	Gastric	stomach
6	chr14:36986400-36989800	Enhancers	Pancreas	Pancrea
7	chr14:36986600-36989400	Bivalent Enhancer	Spleen	Spleen
8	chr14:36987000-36988600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
9	chr14:36987400-36989400	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
10	chr14:36987600-36988600	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
11	chr14:36987800-36988600	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr14:36987800-36989800	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
13	chr14:36988000-36988600	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
14	chr14:36988000-36988600	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr14:36988000-36988600	Bivalent Enhancer	Fetal Brain Male	brain
16	chr14:36988000-36988600	Flanking Bivalent TSS/Enh	Right Ventricle	heart
17	chr14:36988000-36988600	Bivalent/Poised TSS	A549	lung
18	chr14:36988000-36988800	Flanking Bivalent TSS/Enh	Brain Dorsolateral Prefrontal Cortex	brain
19	chr14:36988000-36988800	Bivalent/Poised TSS	Colon Smooth Muscle	Colon
20	chr14:36988000-36988800	Flanking Bivalent TSS/Enh	Psoas Muscle	Psoas
21	chr14:36988000-36988800	Flanking Bivalent TSS/Enh	Skeletal Muscle Female	skeletal muscle
22	chr14:36988000-36989000	Flanking Bivalent TSS/Enh	Stomach Smooth Muscle	stomach
23	chr14:36988000-36989200	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
24	chr14:36988000-36989400	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr14:36988000-36989400	Flanking Bivalent TSS/Enh	Duodenum Smooth Muscle	Duodenum
26	chr14:36988000-36989600	Active TSS	Right Atrium	heart
27	chr14:36988000-36990400	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr14:36988200-36988600	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
29	chr14:36988200-36988600	Bivalent Enhancer	Brain Inferior Temporal Lobe	brain
30	chr14:36988200-36988600	Flanking Bivalent TSS/Enh	Colonic Mucosa	Colon
31	chr14:36988200-36988600	Bivalent/Poised TSS	Fetal Brain Female	brain
32	chr14:36988200-36988600	Bivalent Enhancer	Fetal Muscle Leg	muscle
33	chr14:36988200-36988600	Bivalent Enhancer	Fetal Stomach	stomach
34	chr14:36988200-36988600	Bivalent Enhancer	Left Ventricle	heart
35	chr14:36988200-36988600	Bivalent Enhancer	Rectal Mucosa Donor 29	rectum
36	chr14:36988200-36988600	Bivalent Enhancer	Stomach Mucosa	stomach
37	chr14:36988200-36988800	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr14:36988200-36988800	Bivalent Enhancer	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr14:36988200-36988800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr14:36988200-36988800	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr14:36988200-36988800	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr14:36988200-36988800	Bivalent/Poised TSS	Brain Angular Gyrus	brain
43	chr14:36988200-36988800	Flanking Bivalent TSS/Enh	Duodenum Mucosa	Duodenum
44	chr14:36988200-36988800	Flanking Bivalent TSS/Enh	Esophagus	oesophagus
45	chr14:36988200-36989200	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr14:36988200-36989200	Bivalent/Poised TSS	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr14:36988200-36989200	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr14:36988200-36989200	Active TSS	Aorta	Aorta
49	chr14:36988200-36989200	Bivalent Enhancer	Sigmoid Colon	Sigmoid Colon
50	chr14:36988200-36989400	Flanking Bivalent TSS/Enh	Breast Myoepithelial Primary Cells	Breast

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