Variant report

Variant	rs200785923
Chromosome Location	chr11:77062935-77062936
allele	-/T/TT
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr11:77062659-77063029	MCF-7	breast:	n/a	chr11:77062748-77062761 chr11:77062748-77062759 chr11:77062748-77062761

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:77055992..77058404-chr11:77059954..77063398,3	K562	blood:
2	chr11:77061558..77064270-chr11:77069023..77071192,2	MCF-7	breast:

Variant related genes	Relation type
PAK1	TF binding region
ENSG00000149269	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048360	chr11:76900813-77387933	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv541089	chr11:76900813-77387933	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv1049603	chr11:76900813-77520411	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv541090	chr11:76900813-77520411	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	esv3424135	chr11:76961603-77277087	Strong transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv1037724	chr11:77061945-77250391	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv541091	chr11:77061945-77250391	Weak transcription Active TSS Enhancers Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:77028000-77068400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr11:77028200-77066000	Weak transcription	Fetal Kidney	kidney
3	chr11:77030600-77086800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr11:77031600-77066400	Weak transcription	Gastric	stomach
5	chr11:77031600-77073800	Weak transcription	Spleen	Spleen
6	chr11:77031800-77070400	Weak transcription	Fetal Brain Male	brain
7	chr11:77032200-77066400	Weak transcription	Lung	lung
8	chr11:77033400-77067200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr11:77033400-77090400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr11:77034400-77086200	Weak transcription	NHLF	lung
11	chr11:77034800-77063800	Weak transcription	Brain Substantia Nigra	brain
12	chr11:77034800-77064000	Weak transcription	Brain Hippocampus Middle	brain
13	chr11:77042800-77080800	Strong transcription	Monocytes-CD14+_RO01746	blood
14	chr11:77043400-77066400	Weak transcription	Esophagus	oesophagus
15	chr11:77043400-77072600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr11:77043400-77074800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr11:77043400-77082400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr11:77043400-77083600	Weak transcription	Thymus	Thymus
19	chr11:77043800-77071400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr11:77043800-77088400	Weak transcription	Colonic Mucosa	Colon
21	chr11:77044200-77075000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr11:77044600-77071600	Strong transcription	HUES48 Cell Line	embryonic stem cell
23	chr11:77046200-77077000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr11:77046200-77092400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr11:77046800-77121600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
26	chr11:77047200-77096000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
27	chr11:77047400-77089000	Weak transcription	Primary T cells fromperipheralblood	blood
28	chr11:77047400-77090000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr11:77047800-77063800	Weak transcription	Brain Angular Gyrus	brain
30	chr11:77047800-77066400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr11:77047800-77066400	Weak transcription	A549	lung
32	chr11:77047800-77075000	Weak transcription	Left Ventricle	heart
33	chr11:77047800-77075600	Strong transcription	Primary monocytes fromperipheralblood	blood
34	chr11:77048400-77064000	Weak transcription	Colon Smooth Muscle	Colon
35	chr11:77048600-77066400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr11:77048600-77069200	Weak transcription	Brain Germinal Matrix	brain
37	chr11:77048600-77070000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr11:77048600-77087800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
39	chr11:77048800-77069000	Weak transcription	Primary T helper cells PMA-I stimulated	--
40	chr11:77050400-77072000	Strong transcription	Primary T cells from cord blood	blood
41	chr11:77052000-77063600	Weak transcription	Rectal Smooth Muscle	rectum
42	chr11:77052200-77066000	Weak transcription	Aorta	Aorta
43	chr11:77052600-77063800	Weak transcription	Brain Anterior Caudate	brain
44	chr11:77052600-77085600	Weak transcription	Primary T helper cells fromperipheralblood	blood
45	chr11:77054000-77068200	Strong transcription	Primary neutrophils fromperipheralblood	blood
46	chr11:77055000-77065800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr11:77055000-77085000	Weak transcription	Primary B cells from peripheral blood	blood
48	chr11:77055200-77083400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
49	chr11:77055200-77092200	Weak transcription	Small Intestine	intestine
50	chr11:77055200-77117600	Weak transcription	Pancreas	Pancrea

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links