Variant report

Variant	rs200807522
Chromosome Location	chr1:150765833-150765834
allele	-/TG
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:150533878..150535491-chr1:150763777..150766067,2	K562	blood:

Variant related genes	Relation type
ENSG00000203804	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2829859	chr1:150608894-150937329	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv872418	chr1:150683512-150860471	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	nsv437169	chr1:150738197-150816886	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv1001897	chr1:150743271-151241600	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
5	nsv535158	chr1:150743271-151241600	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
6	nsv2788	chr1:150755334-150800785	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
7	esv3368326	chr1:150764178-150766376	Weak transcription Genic enhancers Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv160180	chr1:150765276-150772670	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:150744600-150768200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr1:150750600-150767600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr1:150756200-150766800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr1:150756400-150767600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr1:150758800-150768400	Weak transcription	Brain Germinal Matrix	brain
6	chr1:150760400-150768200	Weak transcription	Brain Hippocampus Middle	brain
7	chr1:150760400-150771000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr1:150760600-150768200	Weak transcription	Adipose Nuclei	Adipose
9	chr1:150760600-150768200	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr1:150760600-150768400	Weak transcription	Fetal Lung	lung
11	chr1:150760600-150768800	Weak transcription	Duodenum Mucosa	Duodenum
12	chr1:150760600-150768800	Weak transcription	Fetal Intestine Small	intestine
13	chr1:150760600-150769000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr1:150760600-150770200	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr1:150760600-150771000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr1:150760600-150771400	Weak transcription	Fetal Kidney	kidney
17	chr1:150760600-150779600	Weak transcription	Primary hematopoietic stem cells	blood
18	chr1:150760800-150768200	Weak transcription	NHLF	lung
19	chr1:150760800-150768600	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr1:150760800-150768800	Weak transcription	Brain Anterior Caudate	brain
21	chr1:150760800-150771000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr1:150761000-150768000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr1:150761000-150768000	Weak transcription	Left Ventricle	heart
24	chr1:150761000-150768400	Weak transcription	Colonic Mucosa	Colon
25	chr1:150761200-150768000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr1:150761200-150768000	Weak transcription	Aorta	Aorta
27	chr1:150761200-150771000	Weak transcription	Primary B cells from peripheral blood	blood
28	chr1:150761200-150783200	Weak transcription	GM12878-XiMat	blood
29	chr1:150761800-150770800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr1:150762000-150767800	Weak transcription	NHDF-Ad	bronchial
31	chr1:150762200-150768800	Weak transcription	Placenta Amnion	Placenta Amnion
32	chr1:150762400-150767800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr1:150762400-150768000	Weak transcription	Pancreas	Pancrea
34	chr1:150762400-150768800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr1:150762400-150769000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr1:150762400-150770200	Weak transcription	Esophagus	oesophagus
37	chr1:150762400-150779200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
38	chr1:150762400-150780000	Weak transcription	NHEK	skin
39	chr1:150762600-150768000	Weak transcription	Placenta	Placenta
40	chr1:150762600-150768200	Weak transcription	Ovary	ovary
41	chr1:150762600-150768600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr1:150762600-150768800	Weak transcription	Spleen	Spleen
43	chr1:150762800-150768000	Weak transcription	Lung	lung
44	chr1:150763200-150767400	Weak transcription	Fetal Stomach	stomach
45	chr1:150763400-150769600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
46	chr1:150764200-150770600	Enhancers	Primary monocytes fromperipheralblood	blood
47	chr1:150764400-150767800	Weak transcription	Osteobl	bone
48	chr1:150764600-150768000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr1:150764600-150781600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr1:150764800-150766400	Enhancers	Monocytes-CD14+_RO01746	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links