Variant report

Variant	rs200829360
Chromosome Location	chr17:18129027-18129028
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:18127100..18135567-chr17:18158023..18168767,25	MCF-7	breast:
2	chr17:18127536..18130433-chr17:18148836..18151541,2	MCF-7	breast:
3	chr17:18127269..18131326-chr17:18216439..18220320,6	MCF-7	breast:
4	chr17:18086116..18088007-chr17:18126945..18129861,2	K562	blood:
5	chr17:18128609..18130304-chr17:18157638..18159883,2	K562	blood:
6	chr17:18127264..18129965-chr17:18170745..18172525,2	K562	blood:
7	chr17:18125152..18133137-chr17:18145532..18152012,9	K562	blood:
8	chr17:18128446..18130837-chr17:18148104..18152552,6	MCF-7	breast:
9	chr17:18128887..18137475-chr17:18144772..18151698,11	K562	blood:
10	chr17:18127210..18129786-chr17:18153749..18156676,2	MCF-7	breast:
11	chr17:18127671..18130325-chr17:18161981..18165246,3	K562	blood:
12	chr17:18128940..18129457-chr19:55896848..55897657,2	Hela-S3	cervix:
13	chr17:18126073..18132705-chr17:18158327..18165323,14	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000266677	Chromatin interaction
ENSG00000091542	Chromatin interaction
ENSG00000177731	Chromatin interaction
ENSG00000177427	Chromatin interaction
ENSG00000176994	Chromatin interaction
ENSG00000108107	Chromatin interaction
ENSG00000260647	Chromatin interaction
ENSG00000177302	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531183	chr17:17571035-18205309	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	123 gene(s)	inside rSNPs	diseases
2	nsv916653	chr17:17651916-18454952	Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
3	nsv533142	chr17:17691726-18236686	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	116 gene(s)	inside rSNPs	diseases
4	nsv482491	chr17:17959577-18153920	Enhancers Genic enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
5	nsv1061162	chr17:17978838-18259234	Flanking Active TSS Weak transcription Genic enhancers Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
6	nsv492305	chr17:17980441-18424702	Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
7	nsv1062828	chr17:18098110-18136330	Flanking Active TSS Weak transcription Active TSS Genic enhancers Strong transcription Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
8	nsv543245	chr17:18098110-18136330	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
9	nsv907773	chr17:18099962-18206234	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
10	nsv907774	chr17:18103907-18206234	Transcr. at gene 5' and 3' Genic enhancers Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
11	nsv907775	chr17:18108496-18206234	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
12	nsv543246	chr17:18121007-18165604	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	21 gene(s)	inside rSNPs	diseases
13	nsv9503	chr17:18121474-18169166	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	21 gene(s)	inside rSNPs	diseases
14	nsv907776	chr17:18122485-18170948	Enhancers Strong transcription Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	21 gene(s)	inside rSNPs	diseases
15	nsv1066718	chr17:18125122-18180807	Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
16	esv3440348	chr17:18127752-18130600	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
17	esv3378937	chr17:18128027-18130225	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
18	esv19055	chr17:18128439-18129535	Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:18127400-18129200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr17:18127400-18130000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
3	chr17:18127600-18129800	Active TSS	H9 Cell Line	embryonic stem cell
4	chr17:18127800-18129200	Enhancers	Fetal Brain Male	brain
5	chr17:18127800-18129400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr17:18127800-18129800	Active TSS	ES-I3 Cell Line	embryonic stem cell
7	chr17:18127800-18129800	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr17:18127800-18129800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr17:18127800-18129800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr17:18127800-18130200	Active TSS	iPS-15b Cell Line	embryonic stem cell
11	chr17:18128000-18129200	Enhancers	Rectal Mucosa Donor 31	rectum
12	chr17:18128000-18129600	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr17:18128000-18129600	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr17:18128000-18129600	Bivalent/Poised TSS	HepG2	liver
15	chr17:18128000-18129800	Active TSS	HUES48 Cell Line	embryonic stem cell
16	chr17:18128000-18130600	Active TSS	iPS-18 Cell Line	embryonic stem cell
17	chr17:18128200-18129200	Enhancers	Primary B cells from peripheral blood	blood
18	chr17:18128200-18129200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
19	chr17:18128200-18129200	Enhancers	Primary T helper naive cells from peripheral blood	blood
20	chr17:18128200-18129200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
21	chr17:18128200-18129200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
22	chr17:18128200-18129200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
23	chr17:18128200-18129200	Enhancers	Primary T killer memory cells from peripheral blood	blood
24	chr17:18128200-18129200	Enhancers	Liver	Liver
25	chr17:18128200-18129200	Enhancers	Stomach Mucosa	stomach
26	chr17:18128200-18129200	Enhancers	GM12878-XiMat	blood
27	chr17:18128200-18129400	Active TSS	Psoas Muscle	Psoas
28	chr17:18128200-18129600	Active TSS	Small Intestine	intestine
29	chr17:18128200-18129600	Active TSS	Thymus	Thymus
30	chr17:18128200-18130000	Active TSS	Fetal Kidney	kidney
31	chr17:18128200-18130400	Active TSS	HUES64 Cell Line	embryonic stem cell
32	chr17:18128400-18129200	Enhancers	Primary B cells from cord blood	blood
33	chr17:18128400-18129200	Enhancers	Primary T cells from cord blood	blood
34	chr17:18128400-18129400	Active TSS	Sigmoid Colon	Sigmoid Colon
35	chr17:18128400-18129600	Active TSS	Esophagus	oesophagus
36	chr17:18128400-18129600	Active TSS	Rectal Smooth Muscle	rectum
37	chr17:18128400-18129800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
38	chr17:18128400-18129800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr17:18128400-18129800	Active TSS	Aorta	Aorta
40	chr17:18128400-18129800	Active TSS	Brain Hippocampus Middle	brain
41	chr17:18128400-18129800	Active TSS	Ovary	ovary
42	chr17:18128400-18130000	Active TSS	Pancreatic Islets	Pancreatic Islet
43	chr17:18128600-18129200	Active TSS	Primary neutrophils fromperipheralblood	blood
44	chr17:18128600-18129200	Active TSS	Primary hematopoietic stem cells	blood
45	chr17:18128600-18129200	Active TSS	Primary hematopoietic stem cells short term culture	blood
46	chr17:18128600-18129200	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr17:18128600-18129200	Active TSS	Primary mononuclear cells fromperipheralblood	Blood
48	chr17:18128600-18129200	Active TSS	Brain Germinal Matrix	brain
49	chr17:18128600-18129200	Active TSS	Colonic Mucosa	Colon
50	chr17:18128600-18129200	Enhancers	Placenta	Placenta

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