Variant report

Variant	rs200841781
Chromosome Location	chr3:101134004-101134005
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931417	chr3:100547347-101183844	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	esv3439278	chr3:100936513-101162102	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv1839661	chr3:101133155-101134696	Enhancers Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3'	n/a	n/a	inside rSNPs	diseases
4	nsv967046	chr3:101133196-101134406	Weak transcription Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3'	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:101085600-101137600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:101107000-101140800	Weak transcription	Esophagus	oesophagus
3	chr3:101107200-101161200	Weak transcription	Aorta	Aorta
4	chr3:101108600-101138000	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr3:101111600-101138000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr3:101111600-101145800	Weak transcription	Rectal Smooth Muscle	rectum
7	chr3:101111800-101134800	Weak transcription	Stomach Smooth Muscle	stomach
8	chr3:101114600-101134800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr3:101120000-101142400	Weak transcription	Fetal Stomach	stomach
10	chr3:101124200-101140800	Weak transcription	Fetal Intestine Small	intestine
11	chr3:101126600-101135200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr3:101127400-101135200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr3:101127400-101136800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr3:101127400-101143200	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr3:101128000-101138400	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr3:101128600-101146200	Weak transcription	Dnd41	blood
17	chr3:101129200-101160000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr3:101129400-101137000	Weak transcription	Primary hematopoietic stem cells	blood
19	chr3:101129600-101137200	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr3:101129600-101140800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr3:101131200-101134600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr3:101131200-101139000	Weak transcription	Fetal Muscle Trunk	muscle
23	chr3:101131200-101142400	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr3:101131400-101134600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr3:101131600-101142400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr3:101132600-101136800	Weak transcription	Fetal Lung	lung
27	chr3:101132800-101135000	Genic enhancers	Primary T helper cells PMA-I stimulated	--
28	chr3:101132800-101135000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
29	chr3:101133200-101140800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr3:101133400-101134600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr3:101133400-101135400	Weak transcription	Lung	lung
32	chr3:101133400-101140800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
33	chr3:101133400-101140800	Weak transcription	Gastric	stomach
34	chr3:101133400-101140800	Weak transcription	Left Ventricle	heart
35	chr3:101133400-101142800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr3:101133400-101143000	Weak transcription	Spleen	Spleen
37	chr3:101133400-101143200	Weak transcription	Pancreas	Pancrea
38	chr3:101133600-101134600	Enhancers	Primary T helper naive cells from peripheral blood	blood
39	chr3:101133600-101134600	Enhancers	Primary T killer memory cells from peripheral blood	blood
40	chr3:101133600-101136800	Strong transcription	Primary B cells from peripheral blood	blood
41	chr3:101133600-101160600	Weak transcription	K562	blood
42	chr3:101133800-101134200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
43	chr3:101133800-101134600	Enhancers	Primary T cells from cord blood	blood
44	chr3:101133800-101134800	Weak transcription	Primary B cells from cord blood	blood
45	chr3:101133800-101135400	Strong transcription	Primary T cells fromperipheralblood	blood
46	chr3:101133800-101140800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr3:101133800-101140800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr3:101133800-101142600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
49	chr3:101133800-101142600	Weak transcription	Fetal Thymus	thymus
50	chr3:101134000-101134400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links