Variant report

Variant	rs2008564
Chromosome Location	chr8:122031970-122031971
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs12548955	0.86[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs1368598	0.83[EUR][1000 genomes]
rs1368599	0.83[EUR][1000 genomes]
rs1368600	0.83[EUR][1000 genomes]
rs1368602	0.87[ASN][1000 genomes]
rs1433395	0.83[EUR][1000 genomes]
rs1560773	0.82[EUR][1000 genomes]
rs1560774	0.83[EUR][1000 genomes]
rs1560775	0.83[EUR][1000 genomes]
rs1623074	0.83[EUR][1000 genomes]
rs1625519	0.83[EUR][1000 genomes]
rs1626939	0.83[EUR][1000 genomes]
rs1630924	0.83[EUR][1000 genomes]
rs1631099	0.82[AFR][1000 genomes]
rs1654997	0.83[EUR][1000 genomes]
rs1654999	0.82[EUR][1000 genomes]
rs1655003	0.83[EUR][1000 genomes]
rs1655004	0.83[EUR][1000 genomes]
rs1655005	0.83[EUR][1000 genomes]
rs1655007	0.83[EUR][1000 genomes]
rs1655010	0.83[EUR][1000 genomes]
rs1655012	0.83[EUR][1000 genomes]
rs1655013	0.83[EUR][1000 genomes]
rs1655015	0.85[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs1714641	0.81[EUR][1000 genomes]
rs1714642	0.81[AFR][1000 genomes]
rs1714656	0.83[EUR][1000 genomes]
rs1714657	0.83[EUR][1000 genomes]
rs1714660	0.81[EUR][1000 genomes]
rs1714661	0.86[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs1714665	0.83[EUR][1000 genomes]
rs1714667	0.83[EUR][1000 genomes]
rs1714668	0.82[EUR][1000 genomes]
rs1714669	0.83[EUR][1000 genomes]
rs17196440	0.83[EUR][1000 genomes]
rs17196489	0.83[EUR][1000 genomes]
rs17256063	0.83[EUR][1000 genomes]
rs2386233	0.83[EUR][1000 genomes]
rs2570065	0.89[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs2570068	0.83[EUR][1000 genomes]
rs2680581	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2680582	0.83[EUR][1000 genomes]
rs6469984	0.86[YRI][hapmap]
rs66685226	0.82[ASN][1000 genomes]
rs7007419	0.86[YRI][hapmap]
rs715236	0.83[EUR][1000 genomes]
rs715237	0.83[EUR][1000 genomes]
rs715238	0.83[EUR][1000 genomes]
rs919849	0.83[EUR][1000 genomes]
rs919850	0.83[EUR][1000 genomes]
rs919851	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv465790	chr8:121853405-122185415	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv612114	chr8:121853405-122185415	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv891424	chr8:121873345-122393258	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	esv1844734	chr8:121928250-122283585	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:122031600-122032000	Enhancers	Osteobl	bone
2	chr8:122031800-122032000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr8:122031800-122032000	Enhancers	Muscle Satellite Cultured Cells	--

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