Variant report

Variant	rs200859878
Chromosome Location	chr6:147526512-147526513
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:147526471-147528189	K562	blood:	n/a	n/a
2	TAF1	chr6:147526363-147527318	K562	blood:	n/a	n/a
3	POLR2A	chr6:147522607-147527416	K562	blood:	n/a	n/a
4	POLR2A	chr6:147522796-147527921	MCF10A-Er-Src	breast:	n/a	n/a
5	IRF1	chr6:147525380-147528371	K562	blood:	n/a	chr6:147526878-147526890 chr6:147527041-147527055 chr6:147526209-147526220 chr6:147526878-147526890 chr6:147525907-147525916 chr6:147527979-147527993 chr6:147526876-147526893 chr6:147526956-147526968 chr6:147526878-147526895 chr6:147526957-147526967
6	IRF1	chr6:147525523-147527405	K562	blood:	n/a	chr6:147526878-147526890 chr6:147527041-147527055 chr6:147526209-147526220 chr6:147526878-147526890 chr6:147525907-147525916 chr6:147526876-147526893 chr6:147526956-147526968 chr6:147526878-147526895 chr6:147526957-147526967
7	POLR2A	chr6:147522969-147526535	MCF10A-Er-Src	breast:	n/a	n/a
8	GATA1	chr6:147525669-147526542	PBDE	blood:	n/a	chr6:147526212-147526220
9	CEBPB	chr6:147525682-147527227	Hela-S3	cervix:	n/a	chr6:147526571-147526584
10	UBTF	chr6:147523057-147527635	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr6:147229677..147239083-chr6:147521152..147530893,22	K562	blood:
2	chr6:147475725..147486468-chr6:147521132..147528058,22	K562	blood:
3	chr6:147477631..147490692-chr6:147521132..147530003,24	K562	blood:
4	chr6:147478214..147481987-chr6:147524471..147526667,3	MCF-7	breast:
5	chr6:147232346..147237544-chr6:147521050..147527983,13	K562	blood:
6	chr6:147231935..147237791-chr6:147522176..147527834,11	MCF-7	breast:

Variant related genes	Relation type
STXBP5	TF binding region
STXBP5-AS1	TF binding region
ENSG00000233452	Chromatin interaction
ENSG00000196634	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019245	chr6:147350834-147609776	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv538467	chr6:147350834-147609776	Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv886752	chr6:147443480-147729477	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	esv1820434	chr6:147518489-147543262	Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	esv3387409	chr6:147524059-147526607	Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	esv3338422	chr6:147524084-147526632	Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	esv2412110	chr6:147526508-147526512	Active TSS Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv886753	chr6:147526508-147680291	Strong transcription Weak transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147522800-147528600	Active TSS	Duodenum Mucosa	Duodenum
2	chr6:147522800-147529000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr6:147523000-147526600	Active TSS	Rectal Mucosa Donor 29	rectum
4	chr6:147523000-147526800	Active TSS	Brain Substantia Nigra	brain
5	chr6:147523000-147526800	Active TSS	Duodenum Smooth Muscle	Duodenum
6	chr6:147523000-147526800	Active TSS	Fetal Brain Male	brain
7	chr6:147523000-147527000	Active TSS	H1 Cell Line	embryonic stem cell
8	chr6:147523000-147527000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr6:147523000-147527000	Active TSS	Fetal Stomach	stomach
10	chr6:147523000-147527000	Active TSS	Psoas Muscle	Psoas
11	chr6:147523000-147527000	Active TSS	Rectal Smooth Muscle	rectum
12	chr6:147523000-147527000	Active TSS	Thymus	Thymus
13	chr6:147523000-147527000	Active TSS	GM12878-XiMat	blood
14	chr6:147523000-147527000	Active TSS	NH-A	brain
15	chr6:147523000-147527200	Active TSS	Colonic Mucosa	Colon
16	chr6:147523000-147527200	Active TSS	A549	lung
17	chr6:147523000-147527400	Active TSS	HUES6 Cell Line	embryonic stem cell
18	chr6:147523000-147527400	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr6:147523000-147527400	Active TSS	Fetal Intestine Small	intestine
20	chr6:147523000-147527600	Active TSS	Fetal Intestine Large	intestine
21	chr6:147523000-147527800	Active TSS	Skeletal Muscle Male	skeletal muscle
22	chr6:147523000-147528000	Active TSS	Pancreatic Islets	Pancreatic Islet
23	chr6:147523000-147528600	Active TSS	Brain Cingulate Gyrus	brain
24	chr6:147523000-147528800	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr6:147523000-147528800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr6:147523000-147528800	Active TSS	Brain Anterior Caudate	brain
27	chr6:147523000-147528800	Active TSS	Fetal Adrenal Gland	Adrenal Gland
28	chr6:147523000-147529000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr6:147523000-147529200	Active TSS	NHLF	lung
30	chr6:147523000-147529600	Active TSS	Brain Inferior Temporal Lobe	brain
31	chr6:147523000-147529600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
32	chr6:147523000-147529800	Active TSS	Breast Myoepithelial Primary Cells	Breast
33	chr6:147523200-147526600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr6:147523200-147527000	Active TSS	Sigmoid Colon	Sigmoid Colon
35	chr6:147523200-147527400	Active TSS	Aorta	Aorta
36	chr6:147523200-147527400	Active TSS	HSMMtube	muscle
37	chr6:147523200-147527800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr6:147523200-147528400	Active TSS	K562	blood
39	chr6:147523200-147528800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr6:147523400-147526600	Active TSS	Brain Hippocampus Middle	brain
41	chr6:147523400-147526800	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr6:147523400-147526800	Active TSS	Fetal Thymus	thymus
43	chr6:147523400-147527000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr6:147523400-147527400	Active TSS	HUES48 Cell Line	embryonic stem cell
45	chr6:147523400-147527400	Active TSS	HSMM	muscle
46	chr6:147523400-147528400	Active TSS	Muscle Satellite Cultured Cells	--
47	chr6:147523400-147528600	Active TSS	Rectal Mucosa Donor 31	rectum
48	chr6:147523400-147528600	Active TSS	NHDF-Ad	bronchial
49	chr6:147523400-147528800	Active TSS	Brain Angular Gyrus	brain
50	chr6:147523400-147529000	Active TSS	NHEK	skin

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