Variant report

Variant	rs200866893
Chromosome Location	chr7:145814041-145814042
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889384	chr7:145541783-146239545	Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1023861	chr7:145606069-145910049	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv539170	chr7:145606069-145910049	Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1020950	chr7:145683419-146264304	Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv981604	chr7:145773003-145935052	Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv608927	chr7:145803095-145882001	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv817332	chr7:145811034-145829299	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv933481	chr7:145813559-145814093	Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases
9	nsv933002	chr7:145813618-145814093	Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:145812200-145815200	Active TSS	Brain Angular Gyrus	brain
2	chr7:145812400-145815200	Active TSS	Fetal Brain Female	brain
3	chr7:145812600-145814200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
4	chr7:145812600-145814200	Active TSS	iPS-18 Cell Line	embryonic stem cell
5	chr7:145812600-145814200	Bivalent/Poised TSS	Pancreatic Islets	Pancreatic Islet
6	chr7:145812600-145814200	Active TSS	Rectal Mucosa Donor 29	rectum
7	chr7:145812600-145814400	Active TSS	H9 Cell Line	embryonic stem cell
8	chr7:145812600-145814600	Active TSS	ES-I3 Cell Line	embryonic stem cell
9	chr7:145812800-145814200	Active TSS	HUES48 Cell Line	embryonic stem cell
10	chr7:145812800-145814200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr7:145812800-145814200	Flanking Active TSS	Ovary	ovary
12	chr7:145812800-145814200	Flanking Active TSS	Pancreas	Pancrea
13	chr7:145812800-145814400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
14	chr7:145812800-145814400	Enhancers	Spleen	Spleen
15	chr7:145812800-145814600	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
16	chr7:145812800-145814800	Bivalent/Poised TSS	Fetal Intestine Small	intestine
17	chr7:145812800-145815000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr7:145812800-145815400	Active TSS	Brain Germinal Matrix	brain
19	chr7:145812800-145815400	Active TSS	Fetal Kidney	kidney
20	chr7:145813000-145814200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr7:145813000-145814200	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr7:145813000-145814200	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr7:145813000-145814200	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr7:145813000-145814200	Bivalent/Poised TSS	Fetal Intestine Large	intestine
25	chr7:145813000-145814200	Active TSS	Fetal Lung	lung
26	chr7:145813000-145814200	Enhancers	Placenta	Placenta
27	chr7:145813000-145814200	Active TSS	HSMMtube	muscle
28	chr7:145813000-145814400	Active TSS	Rectal Smooth Muscle	rectum
29	chr7:145813000-145814400	Active TSS	Osteobl	bone
30	chr7:145813200-145814200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr7:145813400-145814200	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr7:145813400-145814200	Flanking Active TSS	Primary hematopoietic stem cells	blood
33	chr7:145813400-145814200	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr7:145813400-145814200	Flanking Bivalent TSS/Enh	Fetal Thymus	thymus
35	chr7:145813400-145814200	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
36	chr7:145813600-145814200	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
37	chr7:145813600-145814200	Enhancers	Esophagus	oesophagus
38	chr7:145813600-145814200	Enhancers	Fetal Heart	heart
39	chr7:145813600-145814200	Flanking Active TSS	Fetal Muscle Trunk	muscle
40	chr7:145813600-145814200	Enhancers	Gastric	stomach
41	chr7:145813600-145814200	Bivalent Enhancer	Sigmoid Colon	Sigmoid Colon
42	chr7:145813600-145814400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
43	chr7:145813600-145814400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr7:145813600-145814400	Flanking Active TSS	Brain Anterior Caudate	brain
45	chr7:145813600-145814400	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
46	chr7:145813600-145814600	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
47	chr7:145813600-145814600	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
48	chr7:145813800-145814200	Bivalent/Poised TSS	Primary T helper naive cells fromperipheralblood	blood
49	chr7:145813800-145814200	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
50	chr7:145813800-145814200	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain

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