Variant report

Variant	rs200869399
Chromosome Location	chr3:159492956-159492957
allele	-/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:159492066..159493625-chr3:159498204..159501036,2	MCF-7	breast:
2	chr3:159481784..159484583-chr3:159491233..159495537,4	MCF-7	breast:
3	chr3:159481683..159485733-chr3:159491404..159494052,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000250588	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv4084	chr3:159492488-159513251	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159483600-159493000	Weak transcription	Gastric	stomach
2	chr3:159483800-159493200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr3:159484000-159494600	Weak transcription	Psoas Muscle	Psoas
4	chr3:159484200-159493200	Weak transcription	Lung	lung
5	chr3:159484200-159501200	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr3:159484400-159493000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr3:159484400-159493000	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr3:159484400-159493000	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr3:159484400-159493200	Weak transcription	Fetal Stomach	stomach
10	chr3:159484400-159505400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr3:159484600-159500400	Weak transcription	Fetal Intestine Small	intestine
12	chr3:159484800-159493000	Weak transcription	HSMMtube	muscle
13	chr3:159485000-159493000	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr3:159485600-159493000	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr3:159485600-159493000	Weak transcription	HMEC	breast
16	chr3:159485600-159493400	Weak transcription	Fetal Brain Female	brain
17	chr3:159485800-159493000	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr3:159486600-159493200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr3:159486800-159493000	Weak transcription	Right Ventricle	heart
20	chr3:159486800-159493000	Weak transcription	NH-A	brain
21	chr3:159486800-159493000	Weak transcription	NHEK	skin
22	chr3:159486800-159494000	Weak transcription	Fetal Heart	heart
23	chr3:159487600-159493000	Weak transcription	Right Atrium	heart
24	chr3:159488400-159494600	Weak transcription	Spleen	Spleen
25	chr3:159488600-159493200	Weak transcription	Pancreas	Pancrea
26	chr3:159488600-159493200	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr3:159488800-159493000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr3:159489400-159493000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr3:159490200-159493000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr3:159490200-159493000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr3:159490200-159493000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr3:159490200-159493000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr3:159490200-159493000	Weak transcription	Left Ventricle	heart
34	chr3:159490200-159501400	Weak transcription	Aorta	Aorta
35	chr3:159491000-159493200	Enhancers	Breast Myoepithelial Primary Cells	Breast
36	chr3:159491000-159495200	Enhancers	Brain Cingulate Gyrus	brain
37	chr3:159491000-159495200	Enhancers	Colon Smooth Muscle	Colon
38	chr3:159491000-159495200	Enhancers	Rectal Smooth Muscle	rectum
39	chr3:159491000-159495200	Enhancers	HUVEC	blood vessel
40	chr3:159491200-159493000	Enhancers	Brain Substantia Nigra	brain
41	chr3:159491400-159493000	Enhancers	Brain Hippocampus Middle	brain
42	chr3:159492000-159493000	Weak transcription	Brain Angular Gyrus	brain
43	chr3:159492200-159495000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr3:159492400-159493000	Enhancers	NHLF	lung
45	chr3:159492400-159493200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr3:159492400-159493400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr3:159492400-159493800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
48	chr3:159492400-159495200	Enhancers	Brain Inferior Temporal Lobe	brain
49	chr3:159492600-159493000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
50	chr3:159492600-159493000	Enhancers	iPS-15b Cell Line	embryonic stem cell

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