Variant report

Variant	rs200870189
Chromosome Location	chr1:151785422-151785423
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:151779253..151781376-chr1:151783822..151786859,3	MCF-7	breast:
2	chr1:151781396..151783619-chr1:151785148..151786691,2	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010398	chr1:151761649-151790940	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv516369	chr1:151780177-151820324	Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
3	esv1804657	chr1:151784152-151825756	Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
4	nsv1008033	chr1:151785029-151843154	Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:151764200-151787000	Weak transcription	Right Ventricle	heart
2	chr1:151764200-151792800	Weak transcription	Lung	lung
3	chr1:151764600-151787600	Weak transcription	Primary T cells from cord blood	blood
4	chr1:151770800-151787200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr1:151774600-151787000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr1:151776600-151787200	Weak transcription	Spleen	Spleen
7	chr1:151778400-151786000	Strong transcription	Thymus	Thymus
8	chr1:151778400-151792800	Weak transcription	Left Ventricle	heart
9	chr1:151778600-151792000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
10	chr1:151778600-151802400	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr1:151778800-151789200	Weak transcription	Fetal Intestine Small	intestine
12	chr1:151779000-151787000	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr1:151780000-151793400	Weak transcription	Stomach Mucosa	stomach
14	chr1:151780200-151786800	Weak transcription	Gastric	stomach
15	chr1:151780800-151786600	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr1:151781000-151786000	Strong transcription	Fetal Thymus	thymus
17	chr1:151781800-151787600	Strong transcription	Duodenum Mucosa	Duodenum
18	chr1:151781800-151788400	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
19	chr1:151782000-151791000	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr1:151782200-151789000	Weak transcription	Esophagus	oesophagus
21	chr1:151782600-151787000	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr1:151782800-151786000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr1:151782800-151790400	Strong transcription	Skeletal Muscle Male	skeletal muscle
24	chr1:151783600-151790800	Strong transcription	Pancreas	Pancrea
25	chr1:151783600-151791400	Weak transcription	Hela-S3	cervix
26	chr1:151783800-151788000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr1:151783800-151792000	Weak transcription	Psoas Muscle	Psoas
28	chr1:151784200-151787400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
29	chr1:151784200-151789400	Strong transcription	Liver	Liver
30	chr1:151784400-151787000	Weak transcription	Fetal Muscle Leg	muscle
31	chr1:151784400-151789800	Strong transcription	Skeletal Muscle Female	skeletal muscle
32	chr1:151784800-151794600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
33	chr1:151784800-151794800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr1:151785000-151785600	Enhancers	Primary T helper cells fromperipheralblood	blood
35	chr1:151785200-151785800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
36	chr1:151785400-151785600	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr1:151785400-151787800	Enhancers	Primary T cells fromperipheralblood	blood
38	chr1:151785400-151788200	Strong transcription	Dnd41	blood

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