Variant report

Variant	rs2008757
Chromosome Location	chr14:56298217-56298218
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10140629	0.86[AFR][1000 genomes]
rs10144024	0.85[AFR][1000 genomes]
rs11629352	0.86[ASN][1000 genomes]
rs28540836	0.80[AFR][1000 genomes]
rs61977794	0.86[ASN][1000 genomes]
rs880193	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv901966	chr14:56160904-56436203	Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv901977	chr14:56213392-56492996	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:56294000-56301800	Enhancers	Stomach Mucosa	stomach
2	chr14:56296400-56298800	Weak transcription	Pancreas	Pancrea
3	chr14:56297600-56299200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr14:56297800-56298400	Enhancers	A549	lung
5	chr14:56298000-56298400	Enhancers	Sigmoid Colon	Sigmoid Colon
6	chr14:56298000-56299400	Enhancers	Rectal Mucosa Donor 31	rectum
7	chr14:56298000-56299600	Enhancers	Hela-S3	cervix
8	chr14:56298200-56299600	Enhancers	HepG2	liver
9	chr14:56298200-56300200	Enhancers	Fetal Intestine Small	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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