Variant report

Variant	rs200877258
Chromosome Location	chr6:33638544-33638545
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:33536613..33539410-chr6:33637420..33640374,2	K562	blood:
2	chr6:33632939..33634646-chr6:33637340..33638930,2	K562	blood:
3	chr6:33635449..33638444-chr6:33638493..33640843,3	K562	blood:
4	chr6:33566688..33568911-chr6:33636835..33638571,2	K562	blood:
5	chr6:33638337..33641498-chr6:33643269..33645828,4	K562	blood:
6	chr6:33632139..33634646-chr6:33635663..33639290,5	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830638	chr6:33551202-33711346	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	46 gene(s)	inside rSNPs	diseases
2	nsv830639	chr6:33592022-33711346	Strong transcription Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	30 gene(s)	inside rSNPs	diseases
3	nsv470811	chr6:33622933-33647651	Weak transcription Strong transcription Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv602838	chr6:33624733-33650743	Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv885771	chr6:33626717-33660143	Weak transcription Genic enhancers Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
6	nsv522906	chr6:33638180-33647651	Strong transcription Genic enhancers Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv885772	chr6:33638180-33767727	Bivalent Enhancer Genic enhancers Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33603400-33640400	Weak transcription	HUVEC	blood vessel
2	chr6:33603400-33641200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr6:33606800-33646600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr6:33608200-33640800	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr6:33611400-33643400	Weak transcription	Left Ventricle	heart
6	chr6:33613000-33659400	Strong transcription	Fetal Intestine Small	intestine
7	chr6:33613200-33660400	Strong transcription	Thymus	Thymus
8	chr6:33615000-33660800	Strong transcription	Fetal Intestine Large	intestine
9	chr6:33619600-33660800	Strong transcription	Rectal Mucosa Donor 29	rectum
10	chr6:33621000-33659400	Strong transcription	Duodenum Mucosa	Duodenum
11	chr6:33621400-33643400	Strong transcription	Spleen	Spleen
12	chr6:33621400-33662200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
13	chr6:33621400-33672600	Strong transcription	Dnd41	blood
14	chr6:33622000-33660000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr6:33622400-33644400	Strong transcription	Gastric	stomach
16	chr6:33623200-33649000	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr6:33623400-33641000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr6:33623400-33644000	Strong transcription	Fetal Stomach	stomach
19	chr6:33624200-33639200	Strong transcription	NHLF	lung
20	chr6:33624600-33664800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
21	chr6:33624800-33639400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr6:33625200-33645200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
23	chr6:33626000-33638600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr6:33626600-33638800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr6:33629000-33662800	Weak transcription	Colon Smooth Muscle	Colon
26	chr6:33630200-33651000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr6:33630400-33640000	Strong transcription	Muscle Satellite Cultured Cells	--
28	chr6:33630400-33650800	Weak transcription	Ovary	ovary
29	chr6:33630400-33660800	Strong transcription	Rectal Mucosa Donor 31	rectum
30	chr6:33630600-33645800	Strong transcription	Fetal Thymus	thymus
31	chr6:33631200-33640200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr6:33631400-33642800	Strong transcription	GM12878-XiMat	blood
33	chr6:33631600-33667000	Strong transcription	H9 Cell Line	embryonic stem cell
34	chr6:33631800-33640800	Weak transcription	Fetal Brain Male	brain
35	chr6:33631800-33649400	Strong transcription	Pancreas	Pancrea
36	chr6:33631800-33661200	Weak transcription	Liver	Liver
37	chr6:33632200-33640800	Weak transcription	Skeletal Muscle Female	skeletal muscle
38	chr6:33632600-33639200	Weak transcription	Psoas Muscle	Psoas
39	chr6:33632600-33639200	Strong transcription	Skeletal Muscle Male	skeletal muscle
40	chr6:33632800-33638800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr6:33633000-33638800	Strong transcription	iPS-15b Cell Line	embryonic stem cell
42	chr6:33633000-33640400	Strong transcription	Duodenum Smooth Muscle	Duodenum
43	chr6:33633400-33642400	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
44	chr6:33634800-33638800	Strong transcription	Adipose Nuclei	Adipose
45	chr6:33634800-33640400	Weak transcription	Osteobl	bone
46	chr6:33635000-33639400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr6:33635200-33638800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
48	chr6:33635200-33640200	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
49	chr6:33635200-33640800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr6:33635400-33639600	Strong transcription	Small Intestine	intestine

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