Variant report

Variant	rs2008817
Chromosome Location	chr15:72596503-72596504
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:72594284..72596932-chr15:72765825..72768164,2	MCF-7	breast:
2	chr15:72522639..72525029-chr15:72595925..72598502,2	K562	blood:

Variant related genes	Relation type
ENSG00000261423	Chromatin interaction
ENSG00000067225	Chromatin interaction
ENSG00000166233	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10851852	0.85[AMR][1000 genomes]
rs10851853	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs28480543	0.80[AFR][1000 genomes]
rs2912219	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2959941	0.83[AFR][1000 genomes]
rs7167909	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7170516	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431395	chr15:72266174-72701777	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	nsv530817	chr15:72350885-72773374	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	173 gene(s)	inside rSNPs	diseases
3	esv3430860	chr15:72373723-72849907	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	172 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72566000-72611400	Weak transcription	Right Ventricle	heart
2	chr15:72567000-72611800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr15:72573200-72603000	Weak transcription	Fetal Intestine Large	intestine
4	chr15:72573800-72597200	Weak transcription	Brain Anterior Caudate	brain
5	chr15:72578000-72611800	Weak transcription	Ovary	ovary
6	chr15:72579000-72598200	Weak transcription	Brain Germinal Matrix	brain
7	chr15:72579600-72602400	Weak transcription	Primary T cells from cord blood	blood
8	chr15:72580800-72598200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr15:72581200-72598600	Weak transcription	Brain Cingulate Gyrus	brain
10	chr15:72582000-72608000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr15:72582000-72611800	Weak transcription	Spleen	Spleen
12	chr15:72582600-72598600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr15:72583800-72611600	Weak transcription	Stomach Smooth Muscle	stomach
14	chr15:72585600-72598200	Weak transcription	Fetal Stomach	stomach
15	chr15:72590200-72604800	Weak transcription	Aorta	Aorta
16	chr15:72590600-72607600	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr15:72590800-72602000	Weak transcription	Left Ventricle	heart
18	chr15:72592600-72597600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr15:72594400-72596800	Weak transcription	Primary B cells from cord blood	blood
20	chr15:72595400-72604600	Weak transcription	Lung	lung
21	chr15:72595600-72597400	Weak transcription	Brain Substantia Nigra	brain
22	chr15:72595600-72598000	Weak transcription	Brain Angular Gyrus	brain
23	chr15:72595600-72598400	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr15:72596000-72612400	Weak transcription	Adipose Nuclei	Adipose
25	chr15:72596200-72597600	Strong transcription	Fetal Intestine Small	intestine
26	chr15:72596400-72599000	Weak transcription	Brain Hippocampus Middle	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links