Variant report

Variant	rs200884226
Chromosome Location	chr1:154530746-154530747
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:23)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:23 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:154528419..154530769-chr1:154535384..154537634,2	MCF-7	breast:
2	chr1:154473384..154476326-chr1:154529885..154532539,2	MCF-7	breast:
3	chr1:154163875..154165876-chr1:154529636..154532185,2	MCF-7	breast:
4	chr1:154505955..154508916-chr1:154529670..154532236,2	K562	blood:
5	chr1:154529667..154532782-chr1:154942768..154945185,3	MCF-7	breast:
6	chr1:154458190..154460389-chr1:154527899..154530840,2	K562	blood:
7	chr1:154191162..154194521-chr1:154529038..154532016,3	MCF-7	breast:
8	chr1:154529464..154531504-chr1:155098937..155100767,2	MCF-7	breast:
9	chr1:154530350..154531883-chr1:154574415..154576930,2	MCF-7	breast:
10	chr1:154528898..154533098-chr1:154907799..154911445,7	MCF-7	breast:
11	chr1:154300262..154302109-chr1:154529497..154531413,2	MCF-7	breast:
12	chr1:154529851..154531893-chr1:154548972..154552165,3	MCF-7	breast:
13	chr1:154529703..154532693-chr1:155057067..155059987,2	K562	blood:
14	chr1:154530639..154532673-chr1:154599012..154601442,2	K562	blood:
15	chr1:154530233..154532966-chr1:154538204..154541561,3	K562	blood:
16	chr1:154529028..154532359-chr1:155034427..155037689,4	MCF-7	breast:
17	chr1:154529257..154532572-chr1:154598516..154601356,4	MCF-7	breast:
18	chr1:154530233..154533708-chr1:154538204..154541561,4	K562	blood:
19	chr1:154529336..154531391-chr1:154925736..154927605,2	MCF-7	breast:
20	chr1:154529223..154531101-chr1:154799055..154800739,2	K562	blood:
21	chr1:154529929..154534088-chr1:154598976..154602957,6	MCF-7	breast:
22	chr1:154528881..154534687-chr1:154578685..154583746,8	MCF-7	breast:
23	chr1:154450828..154453659-chr1:154529713..154531945,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000169291	Chromatin interaction
ENSG00000143590	Chromatin interaction
ENSG00000251246	Chromatin interaction
ENSG00000143612	Chromatin interaction
ENSG00000233875	Chromatin interaction
ENSG00000143549	Chromatin interaction
ENSG00000143515	Chromatin interaction
ENSG00000160716	Chromatin interaction
ENSG00000169242	Chromatin interaction
ENSG00000143569	Chromatin interaction
ENSG00000163346	Chromatin interaction
ENSG00000163239	Chromatin interaction
ENSG00000243364	Chromatin interaction
ENSG00000160710	Chromatin interaction
ENSG00000163344	Chromatin interaction
ENSG00000273110	Chromatin interaction
ENSG00000143537	Chromatin interaction
ENSG00000270361	Chromatin interaction
ENSG00000160691	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948413	chr1:153974621-154797272	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	132 gene(s)	inside rSNPs	diseases
2	nsv521887	chr1:154236570-154684106	Strong transcription Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
3	esv3392983	chr1:154529853-154532901	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	27 gene(s)	inside rSNPs	diseases
4	esv3407675	chr1:154530078-154532176	Flanking Active TSS Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	27 gene(s)	inside rSNPs	diseases
5	esv3405335	chr1:154530628-154531726	Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:154528800-154530800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr1:154528800-154531600	Active TSS	Breast Myoepithelial Primary Cells	Breast
3	chr1:154528800-154532000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr1:154529000-154530800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
5	chr1:154529000-154530800	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
6	chr1:154529000-154530800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr1:154529000-154530800	Flanking Active TSS	Adipose Nuclei	Adipose
8	chr1:154529000-154532200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
9	chr1:154529200-154530800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
10	chr1:154529200-154531800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr1:154529200-154532000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr1:154529200-154532200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr1:154529400-154530800	Flanking Active TSS	Primary T cells fromperipheralblood	blood
14	chr1:154529400-154530800	Flanking Active TSS	Primary hematopoietic stem cells	blood
15	chr1:154529400-154530800	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
16	chr1:154529400-154531400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr1:154529400-154531600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr1:154529400-154531600	Active TSS	Fetal Muscle Trunk	muscle
19	chr1:154529400-154531600	Active TSS	GM12878-XiMat	blood
20	chr1:154529400-154531800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr1:154529400-154532200	Active TSS	H9 Cell Line	embryonic stem cell
22	chr1:154529600-154530800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
23	chr1:154529600-154530800	Flanking Active TSS	Primary B cells from cord blood	blood
24	chr1:154529600-154530800	Active TSS	Stomach Mucosa	stomach
25	chr1:154529600-154531600	Active TSS	NHDF-Ad	bronchial
26	chr1:154529600-154531800	Active TSS	Esophagus	oesophagus
27	chr1:154529600-154532000	Active TSS	Aorta	Aorta
28	chr1:154529600-154532200	Active TSS	HUES48 Cell Line	embryonic stem cell
29	chr1:154529800-154530800	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
30	chr1:154529800-154530800	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
31	chr1:154529800-154531600	Active TSS	Pancreas	Pancrea
32	chr1:154529800-154531600	Active TSS	Right Ventricle	heart
33	chr1:154529800-154531800	Active TSS	Pancreatic Islets	Pancreatic Islet
34	chr1:154529800-154531800	Active TSS	A549	lung
35	chr1:154529800-154532000	Active TSS	Lung	lung
36	chr1:154530000-154531600	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr1:154530000-154531600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr1:154530000-154531600	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr1:154530000-154531600	Active TSS	Muscle Satellite Cultured Cells	--
40	chr1:154530000-154531600	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr1:154530000-154531600	Active TSS	Fetal Intestine Small	intestine
42	chr1:154530000-154531600	Active TSS	HSMM	muscle
43	chr1:154530000-154531600	Active TSS	HSMMtube	muscle
44	chr1:154530000-154531600	Active TSS	NHLF	lung
45	chr1:154530000-154531800	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
46	chr1:154530000-154531800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr1:154530000-154531800	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr1:154530200-154531600	Active TSS	HUES6 Cell Line	embryonic stem cell
49	chr1:154530200-154531600	Active TSS	Left Ventricle	heart
50	chr1:154530200-154531600	Active TSS	HMEC	breast

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