Variant report

Variant	rs200943894
Chromosome Location	chr1:94544812-94544813
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:94541971..94545495-chr1:94547470..94549927,3	MCF-7	breast:

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv871057	chr1:94513142-94577286	ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv871558	chr1:94544276-94576968	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94535800-94547000	Weak transcription	NHDF-Ad	bronchial
2	chr1:94536400-94556400	Weak transcription	Right Atrium	heart
3	chr1:94539600-94546800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr1:94539600-94546800	Weak transcription	Dnd41	blood
5	chr1:94539600-94547000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr1:94539600-94548600	Weak transcription	Thymus	Thymus
7	chr1:94541600-94550400	Weak transcription	Spleen	Spleen
8	chr1:94543200-94545800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr1:94543600-94546000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr1:94543600-94546000	Enhancers	Fetal Kidney	kidney
11	chr1:94543600-94546600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr1:94543800-94545800	Enhancers	Fetal Muscle Leg	muscle
13	chr1:94543800-94546200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr1:94543800-94546400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr1:94544000-94545000	Enhancers	Fetal Lung	lung
16	chr1:94544200-94545400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr1:94544200-94545800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr1:94544200-94545800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr1:94544400-94545000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr1:94544400-94545200	Enhancers	A549	lung
21	chr1:94544400-94545800	Enhancers	HUES64 Cell Line	embryonic stem cell
22	chr1:94544400-94545800	Enhancers	Brain Germinal Matrix	brain
23	chr1:94544400-94546000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
24	chr1:94544400-94546000	Enhancers	Cortex derived primary cultured neurospheres	brain
25	chr1:94544600-94545000	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr1:94544600-94545000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr1:94544600-94545000	Enhancers	Lung	lung
28	chr1:94544600-94545000	Enhancers	Ovary	ovary
29	chr1:94544600-94545000	Flanking Active TSS	HepG2	liver
30	chr1:94544600-94545000	Enhancers	NH-A	brain
31	chr1:94544600-94545200	Enhancers	ES-I3 Cell Line	embryonic stem cell
32	chr1:94544600-94545800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr1:94544600-94545800	Enhancers	Fetal Thymus	thymus
34	chr1:94544800-94545000	Enhancers	Brain Angular Gyrus	brain
35	chr1:94544800-94545000	Enhancers	HSMMtube	muscle
36	chr1:94544800-94545000	Enhancers	NHLF	lung
37	chr1:94544800-94545200	Enhancers	HUES6 Cell Line	embryonic stem cell
38	chr1:94544800-94545200	Enhancers	iPS-18 Cell Line	embryonic stem cell
39	chr1:94544800-94545200	Enhancers	Brain Anterior Caudate	brain
40	chr1:94544800-94545400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr1:94544800-94546800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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