Variant report

Variant	rs200958560
Chromosome Location	chr2:208910649-208910650
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010531	chr2:208610639-209176782	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv536130	chr2:208610639-209176782	Weak transcription Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Active TSS Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv875743	chr2:208688648-208940023	Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv534496	chr2:208814372-209302791	Strong transcription Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
5	esv2345756	chr2:208910151-208910862	Weak transcription	n/a	n/a	inside rSNPs	diseases
6	esv3459057	chr2:208910230-208910760	Weak transcription	n/a	n/a	inside rSNPs	diseases
7	esv3376186	chr2:208910243-208910831	Weak transcription	n/a	n/a	inside rSNPs	diseases
8	esv3423032	chr2:208910246-208910748	Weak transcription	n/a	n/a	inside rSNPs	diseases
9	esv3502745	chr2:208910264-208910787	Weak transcription	n/a	n/a	inside rSNPs	diseases
10	esv3459055	chr2:208910275-208910726	Weak transcription	n/a	n/a	inside rSNPs	diseases
11	esv3459056	chr2:208910283-208910672	Weak transcription	n/a	n/a	inside rSNPs	diseases
12	esv3377812	chr2:208910283-208910706	Weak transcription	n/a	n/a	inside rSNPs	diseases
13	esv3502746	chr2:208910288-208910705	Weak transcription	n/a	n/a	inside rSNPs	diseases
14	esv3502747	chr2:208910288-208910705	Weak transcription	n/a	n/a	inside rSNPs	diseases
15	esv3459054	chr2:208910323-208910656	Weak transcription	n/a	n/a	inside rSNPs	diseases
16	esv3459058	chr2:208910337-208910667	Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:208899000-208912000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr2:208905600-208911400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr2:208907000-208912000	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr2:208907000-208913800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr2:208908200-208911000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr2:208909800-208912000	Weak transcription	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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