Variant report

Variant	rs201002182
Chromosome Location	chr15:92500029-92500030
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:92495579..92497655-chr15:92499848..92503443,3	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048635	chr15:92073294-92557339	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv870094	chr15:92367354-92631647	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv534110	chr15:92397220-92592961	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv3387489	chr15:92499398-92501396	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3439102	chr15:92499898-92501046	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92491600-92500600	Weak transcription	Psoas Muscle	Psoas
2	chr15:92493200-92500200	Enhancers	HMEC	breast
3	chr15:92495400-92505400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr15:92496000-92500800	Enhancers	Left Ventricle	heart
5	chr15:92496000-92500800	Enhancers	Right Atrium	heart
6	chr15:92496400-92500800	Enhancers	Lung	lung
7	chr15:92496800-92500200	Enhancers	Right Ventricle	heart
8	chr15:92497000-92500200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr15:92498000-92500800	Enhancers	Ovary	ovary
10	chr15:92498000-92502200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr15:92498200-92505200	Weak transcription	Colonic Mucosa	Colon
12	chr15:92498200-92555000	Weak transcription	Gastric	stomach
13	chr15:92498400-92505200	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr15:92498600-92503000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr15:92499000-92505200	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr15:92499200-92500800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr15:92499200-92504400	Weak transcription	Primary T helper cells PMA-I stimulated	--
18	chr15:92499400-92500200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr15:92499400-92500200	Enhancers	Brain Inferior Temporal Lobe	brain
20	chr15:92499400-92504400	Weak transcription	Brain Hippocampus Middle	brain
21	chr15:92499600-92500600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr15:92499600-92500800	Enhancers	NHEK	skin
23	chr15:92499600-92504200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr15:92499600-92505800	Weak transcription	Brain Cingulate Gyrus	brain
25	chr15:92499800-92500200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr15:92499800-92503400	Weak transcription	A549	lung
27	chr15:92499800-92504600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr15:92499800-92505200	Weak transcription	Esophagus	oesophagus
29	chr15:92500000-92500600	Weak transcription	Brain Substantia Nigra	brain
30	chr15:92500000-92504400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr15:92500000-92504400	Weak transcription	Hela-S3	cervix
32	chr15:92500000-92505000	Weak transcription	Adipose Nuclei	Adipose
33	chr15:92500000-92505800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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