Variant report

Variant	rs201009624
Chromosome Location	chr4:80273924-80273925
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879505	chr4:79887043-80293046	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv999174	chr4:80212935-80512356	Enhancers Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv980223	chr4:80259303-80276903	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv3434044	chr4:80273640-80274055	Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
5	esv3340923	chr4:80273646-80274492	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3332636	chr4:80273657-80274284	Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv5590	chr4:80273659-80274719	Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv3361497	chr4:80273670-80273982	Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
9	esv3349699	chr4:80273685-80274182	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv3356784	chr4:80273745-80274421	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv4281	chr4:80273747-80274592	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
12	esv3445409	chr4:80273781-80274538	Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
13	esv3411879	chr4:80273824-80274365	Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
14	esv3354607	chr4:80273828-80274212	ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
15	esv3340195	chr4:80273846-80274130	Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
16	esv3397648	chr4:80273906-80274104	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
17	esv3442168	chr4:80273912-80274156	Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:80273400-80274000	Flanking Bivalent TSS/Enh	Gastric	stomach
2	chr4:80273400-80274000	ZNF genes & repeats	Placenta Amnion	Placenta Amnion
3	chr4:80273400-80274400	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
4	chr4:80273400-80274400	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
5	chr4:80273400-80274800	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr4:80273400-80274800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr4:80273400-80274800	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr4:80273400-80274800	Flanking Bivalent TSS/Enh	ES-UCSF4 Cell Line	embryonic stem cell
9	chr4:80273400-80274800	ZNF genes & repeats	Primary B cells from cord blood	blood
10	chr4:80273400-80274800	ZNF genes & repeats	Primary T cells from cord blood	blood
11	chr4:80273400-80274800	Bivalent/Poised TSS	Primary hematopoietic stem cells	blood
12	chr4:80273400-80274800	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
13	chr4:80273400-80274800	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
14	chr4:80273400-80274800	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
15	chr4:80273400-80274800	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr4:80273400-80274800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr4:80273400-80274800	ZNF genes & repeats	Adipose Nuclei	Adipose
18	chr4:80273400-80274800	ZNF genes & repeats	Colon Smooth Muscle	Colon
19	chr4:80273400-80274800	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
20	chr4:80273400-80274800	ZNF genes & repeats	Ovary	ovary
21	chr4:80273400-80274800	ZNF genes & repeats	HUVEC	blood vessel
22	chr4:80273600-80274000	Flanking Bivalent TSS/Enh	Breast Myoepithelial Primary Cells	Breast
23	chr4:80273600-80274000	ZNF genes & repeats	Primary mononuclear cells fromperipheralblood	Blood
24	chr4:80273600-80274000	Flanking Bivalent TSS/Enh	Aorta	Aorta
25	chr4:80273600-80274000	Flanking Bivalent TSS/Enh	Psoas Muscle	Psoas
26	chr4:80273600-80274000	Flanking Bivalent TSS/Enh	Sigmoid Colon	Sigmoid Colon
27	chr4:80273600-80274000	Flanking Bivalent TSS/Enh	Dnd41	blood
28	chr4:80273600-80274000	Flanking Bivalent TSS/Enh	Hela-S3	cervix
29	chr4:80273600-80274400	ZNF genes & repeats	Fetal Stomach	stomach
30	chr4:80273600-80274400	Bivalent/Poised TSS	Left Ventricle	heart
31	chr4:80273600-80274400	Bivalent Enhancer	NHLF	lung
32	chr4:80273600-80274600	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
33	chr4:80273600-80274600	Bivalent Enhancer	Right Ventricle	heart
34	chr4:80273600-80274800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
35	chr4:80273600-80274800	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
36	chr4:80273600-80274800	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr4:80273600-80274800	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr4:80273600-80274800	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
39	chr4:80273600-80274800	ZNF genes & repeats	Muscle Satellite Cultured Cells	--
40	chr4:80273600-80274800	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
41	chr4:80273600-80274800	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr4:80273600-80274800	ZNF genes & repeats	Brain Angular Gyrus	brain
43	chr4:80273600-80274800	ZNF genes & repeats	Brain Anterior Caudate	brain
44	chr4:80273600-80274800	ZNF genes & repeats	Brain Substantia Nigra	brain
45	chr4:80273600-80274800	ZNF genes & repeats	Colonic Mucosa	Colon
46	chr4:80273600-80274800	ZNF genes & repeats	Fetal Brain Male	brain
47	chr4:80273600-80274800	ZNF genes & repeats	Fetal Heart	heart
48	chr4:80273600-80274800	ZNF genes & repeats	Fetal Kidney	kidney
49	chr4:80273600-80274800	ZNF genes & repeats	Fetal Lung	lung
50	chr4:80273600-80274800	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum

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