Variant report

Variant	rs2010355
Chromosome Location	chr5:90349562-90349563
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:90348024..90350979-chr5:90676084..90679046,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000113369	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1848486	0.82[YRI][hapmap]
rs1848487	0.82[YRI][hapmap]
rs1852734	0.83[YRI][hapmap]
rs2662283	0.82[YRI][hapmap]
rs2697543	0.86[YRI][hapmap]
rs2697546	0.82[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529544	chr5:89523963-90412409	Weak transcription Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv1024813	chr5:90321535-90870739	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
3	nsv537806	chr5:90321535-90870739	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2010355	GPR98	cis	parietal	SCAN

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:90324600-90350400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr5:90341200-90376600	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr5:90344400-90353800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr5:90344800-90368000	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr5:90348200-90350800	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr5:90348200-90351000	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr5:90348400-90350000	Enhancers	Adipose Nuclei	Adipose
8	chr5:90348400-90350000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
9	chr5:90348400-90350400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr5:90348400-90351600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr5:90348600-90349600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr5:90348600-90349800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr5:90348600-90350000	Enhancers	Hela-S3	cervix
14	chr5:90348800-90349600	Enhancers	Primary neutrophils fromperipheralblood	blood
15	chr5:90348800-90349600	Enhancers	Fetal Kidney	kidney
16	chr5:90348800-90349600	Enhancers	A549	lung
17	chr5:90348800-90349800	Enhancers	Colon Smooth Muscle	Colon
18	chr5:90348800-90349800	Enhancers	HUVEC	blood vessel
19	chr5:90348800-90350000	Enhancers	Rectal Smooth Muscle	rectum
20	chr5:90349000-90349800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr5:90349000-90349800	Enhancers	Duodenum Mucosa	Duodenum
22	chr5:90349200-90349600	Enhancers	Fetal Intestine Large	intestine
23	chr5:90349200-90349800	Enhancers	Duodenum Smooth Muscle	Duodenum
24	chr5:90349200-90349800	Enhancers	Rectal Mucosa Donor 29	rectum
25	chr5:90349400-90349800	Flanking Active TSS	Primary hematopoietic stem cells	blood
26	chr5:90349400-90349800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr5:90349400-90354000	Weak transcription	Sigmoid Colon	Sigmoid Colon

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