Variant report

Variant	rs201041502
Chromosome Location	chr7:150779695-150779696
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr7:150771355-150780971	HepG2	liver:	n/a	n/a
2	UBTF	chr7:150777304-150779748	K562	blood:	n/a	n/a
3	E2F6	chr7:150777236-150780026	K562	blood:	n/a	chr7:150777982-150777991 chr7:150778035-150778042 chr7:150778130-150778139
4	POLR2A	chr7:150777099-150780798	K562	blood:	n/a	n/a
5	YY1	chr7:150779166-150779969	K562	blood:	n/a	chr7:150779707-150779721
6	CCNT2	chr7:150779406-150780927	K562	blood:	n/a	chr7:150780134-150780143 chr7:150780800-150780809 chr7:150780128-150780137 chr7:150780394-150780403
7	HEY1	chr7:150777076-150780386	K562	blood:	n/a	chr7:150778008-150778023
8	MAZ	chr7:150777093-150781017	K562	blood:	n/a	chr7:150778013-150778023
9	HEY1	chr7:150779127-150780403	K562	blood:	n/a	n/a
10	YY1	chr7:150779161-150779910	K562	blood:	n/a	chr7:150779707-150779721
11	ETS1	chr7:150779586-150781050	K562	blood:	n/a	chr7:150780134-150780145 chr7:150780555-150780565 chr7:150780556-150780569 chr7:150780266-150780277 chr7:150780135-150780146 chr7:150780555-150780566 chr7:150780635-150780648 chr7:150780557-150780566 chr7:150780737-150780748 chr7:150780557-150780566
12	MAX	chr7:150778587-150779804	K562	blood:	n/a	n/a
13	HMGN3	chr7:150779306-150780862	K562	blood:	n/a	n/a
14	TBP	chr7:150777177-150780981	K562	blood:	n/a	n/a
15	POLR2A	chr7:150779685-150779799	HepG2	liver:	n/a	n/a
16	YY1	chr7:150779143-150779823	HepG2	liver:	n/a	chr7:150779707-150779721
17	POLR2A	chr7:150771379-150780837	K562	blood:	n/a	n/a
18	GTF2F1	chr7:150779503-150780104	K562	blood:	n/a	n/a
19	RCOR1	chr7:150779422-150780627	K562	blood:	n/a	n/a
20	MAX	chr7:150776885-150781120	K562	blood:	n/a	chr7:150778013-150778023
21	MYC	chr7:150776983-150781134	K562	blood:	n/a	chr7:150778013-150778023
22	MXI1	chr7:150779473-150781629	SK-N-SH	brain:	n/a	chr7:150780683-150780692
23	POLR2A	chr7:150770710-150780869	K562	blood:	n/a	n/a
24	MAX	chr7:150776903-150781102	HepG2	liver:	n/a	chr7:150778013-150778023
25	E2F6	chr7:150779593-150779823	K562	blood:	n/a	n/a
26	NR2F2	chr7:150775943-150781692	K562	blood:	n/a	n/a
27	POLR2A	chr7:150776958-150780877	K562	blood:	n/a	n/a
28	TBL1XR1	chr7:150779140-150780931	K562	blood:	n/a	n/a
29	POLR2A	chr7:150778557-150780366	K562	blood:	n/a	n/a
30	POLR2A	chr7:150771496-150780936	K562	blood:	n/a	n/a
31	ZBTB7A	chr7:150776960-150780852	K562	blood:	n/a	chr7:150778116-150778123 chr7:150780751-150780762 chr7:150779710-150779718
32	CREB1	chr7:150776969-150779696	HepG2	liver:	n/a	n/a
33	TEAD4	chr7:150776531-150780464	K562	blood:	n/a	n/a
34	MXI1	chr7:150779258-150780015	K562	blood:	n/a	n/a
35	CHD2	chr7:150779519-150779955	K562	blood:	n/a	n/a
36	MAZ	chr7:150779418-150781458	IMR90	lung:	n/a	n/a
37	POLR2A	chr7:150772771-150780682	K562	blood:	n/a	n/a
38	POLR2A	chr7:150770729-150780701	K562	blood:	n/a	n/a
39	UBTF	chr7:150777157-150780742	K562	blood:	n/a	n/a
40	POLR2A	chr7:150770725-150780903	K562	blood:	n/a	n/a
41	SMARCB1	chr7:150779649-150781080	Hela-S3	cervix:	n/a	n/a
42	CBX3	chr7:150778354-150780326	K562	blood:	n/a	n/a

Variant related genes	Relation type
FASTK	TF binding region
AGAP3	TF binding region

Extended variants
information (count: 27 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:27 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1821419	chr7:150593315-150974269	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	128 gene(s)	inside rSNPs	diseases
2	nsv1022246	chr7:150619660-150779924	Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Enhancers Weak transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
3	nsv889465	chr7:150640285-150800823	Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
4	nsv1017863	chr7:150643928-150779924	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
5	nsv539197	chr7:150643928-150779924	Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
6	nsv1028645	chr7:150643928-150806534	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases
7	nsv539198	chr7:150643928-150879259	Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
8	nsv889476	chr7:150729212-150951819	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	120 gene(s)	inside rSNPs	diseases
9	nsv1031733	chr7:150730999-150790517	Transcr. at gene 5' and 3' Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
10	nsv889477	chr7:150731698-150837529	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	57 gene(s)	inside rSNPs	diseases
11	nsv889478	chr7:150732812-150889527	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	61 gene(s)	inside rSNPs	diseases
12	nsv831188	chr7:150735204-150912875	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
13	nsv889479	chr7:150736382-150785321	Flanking Active TSS Active TSS Enhancers Genic enhancers Bivalent Enhancer Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
14	nsv889480	chr7:150736382-150797581	Active TSS Bivalent Enhancer Genic enhancers Flanking Active TSS Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
15	nsv1028023	chr7:150738624-150790517	Strong transcription Genic enhancers Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
16	nsv465214	chr7:150751590-150822192	Flanking Active TSS Enhancers Bivalent/Poised TSS Genic enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
17	nsv609012	chr7:150751590-150822192	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
18	nsv609013	chr7:150751590-150832913	Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
19	nsv465215	chr7:150762871-150825087	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
20	nsv609014	chr7:150762871-150825087	Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
21	nsv889481	chr7:150766799-150837529	Weak transcription Genic enhancers Flanking Active TSS Active TSS Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
22	nsv889482	chr7:150766799-150851566	Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
23	nsv889483	chr7:150773165-150787046	Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	26 gene(s)	inside rSNPs	diseases
24	nsv889484	chr7:150774308-150787046	Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	26 gene(s)	inside rSNPs	diseases
25	nsv889485	chr7:150774308-150788304	Strong transcription Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	27 gene(s)	inside rSNPs	diseases
26	nsv889486	chr7:150775306-150891641	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases
27	esv3406348	chr7:150779369-150781767	Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:150776400-150780000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
2	chr7:150776800-150781000	Active TSS	H9 Cell Line	embryonic stem cell
3	chr7:150776800-150781200	Active TSS	Pancreatic Islets	Pancreatic Islet
4	chr7:150777000-150781000	Active TSS	iPS-20b Cell Line	embryonic stem cell
5	chr7:150777200-150780600	Active TSS	Small Intestine	intestine
6	chr7:150777200-150780800	Active TSS	iPS-18 Cell Line	embryonic stem cell
7	chr7:150777600-150780600	Enhancers	Fetal Brain Male	brain
8	chr7:150778000-150779800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
9	chr7:150778000-150779800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
10	chr7:150778000-150780000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr7:150778000-150780000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr7:150778000-150780000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
13	chr7:150778000-150780000	Flanking Active TSS	Liver	Liver
14	chr7:150778000-150780000	Flanking Active TSS	Colonic Mucosa	Colon
15	chr7:150778000-150780000	Flanking Active TSS	Pancreas	Pancrea
16	chr7:150778000-150780000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
17	chr7:150778000-150780000	Flanking Active TSS	Stomach Smooth Muscle	stomach
18	chr7:150778000-150780000	Flanking Active TSS	HUVEC	blood vessel
19	chr7:150778000-150780000	Flanking Active TSS	Osteobl	bone
20	chr7:150778000-150780200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr7:150778000-150780200	Flanking Active TSS	Adipose Nuclei	Adipose
22	chr7:150778000-150780200	Flanking Active TSS	Fetal Muscle Leg	muscle
23	chr7:150778200-150779800	Enhancers	Primary B cells from cord blood	blood
24	chr7:150778200-150780000	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
25	chr7:150778200-150780000	Flanking Active TSS	Hela-S3	cervix
26	chr7:150778200-150780200	Flanking Active TSS	Brain Germinal Matrix	brain
27	chr7:150778400-150779800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr7:150778400-150779800	Enhancers	Primary monocytes fromperipheralblood	blood
29	chr7:150778400-150779800	Enhancers	Primary neutrophils fromperipheralblood	blood
30	chr7:150778400-150779800	Enhancers	Brain Angular Gyrus	brain
31	chr7:150778400-150779800	Enhancers	Brain Cingulate Gyrus	brain
32	chr7:150778400-150779800	Enhancers	Fetal Heart	heart
33	chr7:150778400-150779800	Transcr. at gene 5' and 3'	NHLF	lung
34	chr7:150778400-150780000	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr7:150778400-150780000	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
36	chr7:150778600-150779800	Enhancers	H1 Cell Line	embryonic stem cell
37	chr7:150778600-150779800	Enhancers	Ovary	ovary
38	chr7:150778600-150780000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr7:150778600-150780000	Flanking Active TSS	Colon Smooth Muscle	Colon
40	chr7:150778600-150780000	Flanking Active TSS	Duodenum Mucosa	Duodenum
41	chr7:150778600-150780000	Flanking Active TSS	Fetal Intestine Large	intestine
42	chr7:150778600-150780000	Flanking Active TSS	Placenta	Placenta
43	chr7:150778600-150780000	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
44	chr7:150778600-150780000	Flanking Active TSS	Rectal Smooth Muscle	rectum
45	chr7:150778600-150780000	Flanking Active TSS	NHDF-Ad	bronchial
46	chr7:150778600-150780200	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
47	chr7:150778800-150779800	Flanking Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr7:150778800-150779800	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
49	chr7:150778800-150779800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
50	chr7:150778800-150780000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links