Variant report

Variant	rs201046244
Chromosome Location	chr6:37832454-37832455
allele	-/TGTATATA
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:37831095..37834657-chr6:37839870..37842931,3	MCF-7	breast:
2	chr6:37827459..37830301-chr6:37832209..37835878,4	MCF-7	breast:
3	chr6:37831139..37833570-chr6:37835178..37837982,3	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1024016	chr6:37567651-37981590	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1017051	chr6:37789341-38084719	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv538203	chr6:37789341-38084719	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1018711	chr6:37813397-37981590	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1016375	chr6:37816863-37865655	Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv538204	chr6:37816863-37865655	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv348662	chr6:37832437-37832498	Weak transcription Enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37800200-37836200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr6:37801200-37833400	Weak transcription	Fetal Muscle Leg	muscle
3	chr6:37802600-37834400	Weak transcription	Duodenum Mucosa	Duodenum
4	chr6:37808000-37839000	Weak transcription	Fetal Stomach	stomach
5	chr6:37808600-37832600	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr6:37812000-37832600	Weak transcription	Primary hematopoietic stem cells	blood
7	chr6:37812600-37836000	Weak transcription	Fetal Intestine Small	intestine
8	chr6:37813600-37845200	Weak transcription	K562	blood
9	chr6:37814000-37835400	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr6:37814200-37833400	Weak transcription	HSMMtube	muscle
11	chr6:37818000-37833800	Weak transcription	NHLF	lung
12	chr6:37818400-37833400	Weak transcription	Gastric	stomach
13	chr6:37818400-37833400	Weak transcription	Right Ventricle	heart
14	chr6:37818400-37836000	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr6:37819000-37833400	Weak transcription	Primary B cells from peripheral blood	blood
16	chr6:37820000-37833600	Weak transcription	Adipose Nuclei	Adipose
17	chr6:37820000-37834600	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr6:37820000-37835400	Weak transcription	Fetal Heart	heart
19	chr6:37820000-37850200	Weak transcription	Fetal Kidney	kidney
20	chr6:37820400-37836000	Weak transcription	Brain Cingulate Gyrus	brain
21	chr6:37824000-37842000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr6:37824400-37836200	Weak transcription	Fetal Intestine Large	intestine
23	chr6:37825800-37833400	Weak transcription	Aorta	Aorta
24	chr6:37826000-37832600	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr6:37826200-37833400	Weak transcription	Pancreas	Pancrea
26	chr6:37826200-37834400	Weak transcription	HUES48 Cell Line	embryonic stem cell
27	chr6:37826200-37834600	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr6:37826400-37833000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
29	chr6:37826400-37834600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr6:37826400-37835000	Weak transcription	HUVEC	blood vessel
31	chr6:37826800-37832800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
32	chr6:37826800-37836200	Weak transcription	Stomach Smooth Muscle	stomach
33	chr6:37827000-37833000	Weak transcription	Primary T helper cells fromperipheralblood	blood
34	chr6:37827000-37833600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr6:37827200-37833400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
36	chr6:37827200-37834200	Weak transcription	Pancreatic Islets	Pancreatic Islet
37	chr6:37827600-37834400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
38	chr6:37827600-37834400	Weak transcription	Stomach Mucosa	stomach
39	chr6:37828400-37834400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
40	chr6:37828600-37835400	Weak transcription	Brain Germinal Matrix	brain
41	chr6:37828800-37832800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
42	chr6:37828800-37835000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr6:37829000-37837800	Weak transcription	Dnd41	blood
44	chr6:37829200-37833000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr6:37829200-37834600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr6:37830200-37833000	Weak transcription	Primary neutrophils fromperipheralblood	blood
47	chr6:37830600-37833400	Weak transcription	Left Ventricle	heart
48	chr6:37830600-37834600	Weak transcription	HUES6 Cell Line	embryonic stem cell
49	chr6:37830600-37834600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
50	chr6:37831000-37832600	Weak transcription	Thymus	Thymus

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