Variant report

Variant	rs201048665
Chromosome Location	chr4:26926708-26926709
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470021	chr4:26721578-27067027	Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv1001306	chr4:26821511-26955344	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv461312	chr4:26844674-27078376	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv593872	chr4:26844674-27078376	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv1000568	chr4:26886920-27049554	Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv3385459	chr4:26926504-26930302	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26907200-26937800	Weak transcription	Stomach Mucosa	stomach
2	chr4:26911600-26965800	Weak transcription	HMEC	breast
3	chr4:26914600-26936800	Weak transcription	Small Intestine	intestine
4	chr4:26914800-26929200	Weak transcription	K562	blood
5	chr4:26914800-26929600	Weak transcription	Pancreas	Pancrea
6	chr4:26914800-26930000	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr4:26914800-26932400	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr4:26914800-26932600	Weak transcription	Spleen	Spleen
9	chr4:26914800-26942200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr4:26918200-26938400	Weak transcription	Psoas Muscle	Psoas
11	chr4:26918400-26939800	Weak transcription	Fetal Heart	heart
12	chr4:26919600-26932800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr4:26919800-26927000	Weak transcription	HepG2	liver
14	chr4:26920000-26926800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr4:26921800-26932400	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr4:26922200-26932400	Weak transcription	Fetal Kidney	kidney
17	chr4:26922400-26927400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr4:26922600-26932600	Weak transcription	Brain Substantia Nigra	brain
19	chr4:26922800-26941400	Weak transcription	Brain Hippocampus Middle	brain
20	chr4:26923000-26932400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr4:26923000-26940200	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr4:26923000-26942400	Weak transcription	Fetal Brain Male	brain
23	chr4:26923000-26942400	Weak transcription	Left Ventricle	heart
24	chr4:26923200-26939400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr4:26923200-26941400	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr4:26923200-26942400	Weak transcription	Brain Angular Gyrus	brain
27	chr4:26923200-26965800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr4:26923200-26977200	Weak transcription	Thymus	Thymus
29	chr4:26923400-26954400	Weak transcription	HSMM	muscle
30	chr4:26923400-26960600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr4:26923600-26931200	Weak transcription	Liver	Liver
32	chr4:26923600-26936000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
33	chr4:26923800-26931400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
34	chr4:26923800-26943800	Weak transcription	Fetal Lung	lung
35	chr4:26924400-26927600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr4:26924400-26927600	Weak transcription	Duodenum Mucosa	Duodenum
37	chr4:26924400-26931400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
38	chr4:26924400-26932400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
39	chr4:26924400-26932600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
40	chr4:26924400-26932600	Weak transcription	Brain Cingulate Gyrus	brain
41	chr4:26924400-26936000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
42	chr4:26924400-26936200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
43	chr4:26924400-26936400	Weak transcription	Primary B cells from cord blood	blood
44	chr4:26924400-26936400	Weak transcription	Primary T helper cells PMA-I stimulated	--
45	chr4:26924400-26938200	Weak transcription	GM12878-XiMat	blood
46	chr4:26924400-26938400	Weak transcription	Ovary	ovary
47	chr4:26924400-26940200	Weak transcription	Rectal Mucosa Donor 31	rectum
48	chr4:26924400-26940600	Weak transcription	Rectal Mucosa Donor 29	rectum
49	chr4:26924400-26955200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
50	chr4:26924600-26927600	Weak transcription	Fetal Thymus	thymus

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