The 2.0 version of rSNPBase
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Variant report
Variant
rs201060150
Chromosome Location
chr7:53632341-53632342
allele
A/C
Outlinks
Ensembl
 
UCSC
Chromatin state
Related regulatory elements
Target genes
Other information
TF binding region (count:0)
CpG islands (count:0)
Chromatin interactive region (count:0)
LncRNA region (count:1)
Mature miRNA region (count: 0)
miRNA target sites (count:0)
No data
No data
No data
(count:1 , 50 per page) page:
1
No.
lncRNA name
Chromosome Location
lncRNA alias
1
lnc-SEC61G-5
chr7:53632229-53632362
XLOC_006446
No data
No data
No data
Extended variants information (count: 3 )
Associated traits (count: 0)
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
No.
Variant name
Chromosome position
Chromatin state
Related regulatory elements
Target genes
Extended variants
Associated traits
1
nsv948546
chr7:53538304-54337148
Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription
TF binding regionCpG islandChromatin interactive regionlncRNA
12 gene(s)
inside rSNPs
diseases
2
esv2761330
chr7:53601598-53632542
Enhancers Weak transcription Bivalent Enhancer
lncRNA
n/a
inside rSNPs
diseases
3
nsv888046
chr7:53613811-53661764
Enhancers Weak transcription
TF binding regionlncRNA
1 gene(s)
inside rSNPs
diseases
No data
Chromatin state (count:0 , 50 per page) page:
No data
Quick Search:
Input of quick search could be:
dbSNP/dbVar ID:
rs12345
/
nsv7879
a single nucleotide as 0-based coordinates:
chr1:12345
chromosomal regions:
chr1:12345-34567
what's new
New variant types
New dimension of annotation
New regulatory manner
More detailed annotation on variant overlapped TFBS
More extended data
New search manner
Quick links