Variant report

Variant	rs201063400
Chromosome Location	chr11:94278029-94278030
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr11:94276463-94278246	HCT-116	colon:	n/a	chr11:94276987-94276997
2	MAZ	chr11:94276727-94278176	K562	blood:	n/a	chr11:94276987-94276997
3	POLR2A	chr11:94276731-94278094	GM18526	blood:	n/a	n/a
4	POLR2A	chr11:94276324-94278276	GM19193	blood:	n/a	n/a
5	MAX	chr11:94276666-94278264	K562	blood:	n/a	chr11:94276987-94276997
6	POLR2A	chr11:94276533-94279695	HL-60	blood:	n/a	n/a
7	E2F6	chr11:94276833-94278318	K562	blood:	n/a	chr11:94277003-94277014 chr11:94277092-94277102
8	SIN3A	chr11:94276651-94278975	H1-hESC	embryonic stem cell:	n/a	n/a
9	TBP	chr11:94276737-94278119	K562	blood:	n/a	n/a
10	POLR2A	chr11:94276767-94278145	GM12892	blood:	n/a	n/a
11	HMGN3	chr11:94276810-94278323	K562	blood:	n/a	n/a
12	E2F6	chr11:94276674-94278954	H1-hESC	embryonic stem cell:	n/a	chr11:94277003-94277014 chr11:94277092-94277102
13	CTCF	chr11:94277880-94278030	GM12871	blood:	n/a	n/a
14	ZBTB7A	chr11:94277159-94278149	K562	blood:	n/a	chr11:94277243-94277254
15	CTCF	chr11:94277880-94278030	K562	blood:	n/a	n/a
16	E2F6	chr11:94276749-94278232	K562	blood:	n/a	chr11:94277003-94277014 chr11:94277092-94277102
17	MYC	chr11:94276703-94278135	K562	blood:	n/a	chr11:94276987-94276997
18	ELF1	chr11:94276814-94278365	GM12878	blood:	n/a	chr11:94276988-94277000 chr11:94276959-94276971
19	ZNF143	chr11:94276853-94278236	GM12878	blood:	n/a	n/a
20	MAX	chr11:94276784-94278961	H1-hESC	embryonic stem cell:	n/a	chr11:94276987-94276997
21	CTCF	chr11:94277880-94278030	Caco-2	colon:	n/a	n/a
22	MYC	chr11:94277983-94278162	H1-hESC	embryonic stem cell:	n/a	n/a
23	E2F6	chr11:94276724-94278872	H1-hESC	embryonic stem cell:	n/a	chr11:94277003-94277014 chr11:94277092-94277102
24	MAZ	chr11:94276690-94278158	GM12878	blood:	n/a	chr11:94276987-94276997
25	CTCF	chr11:94277920-94278070	GM12868	blood:	n/a	n/a
26	E2F6	chr11:94278003-94278176	K562	blood:	n/a	n/a
27	MXI1	chr11:94277986-94278233	H1-hESC	embryonic stem cell:	n/a	n/a
28	POLR2A	chr11:94276588-94279458	NB4	blood:	n/a	n/a
29	UBTF	chr11:94276800-94278221	K562	blood:	n/a	n/a
30	CTBP2	chr11:94276885-94278743	H1-hESC	embryonic stem cell:	n/a	n/a
31	MAX	chr11:94276446-94279542	NB4	blood:	n/a	chr11:94276987-94276997
32	HA-E2F1	chr11:94276908-94278086	Hela-S3	cervix:	n/a	chr11:94277092-94277102
33	UBTF	chr11:94276696-94278150	K562	blood:	n/a	n/a
34	SETDB1	chr11:94276835-94278432	K562	blood:	n/a	n/a
35	POLR2A	chr11:94276052-94281337	HL-60	blood:	n/a	n/a
36	POLR2A	chr11:94276752-94278099	K562	blood:	n/a	n/a
37	MYC	chr11:94276506-94279586	NB4	blood:	n/a	chr11:94276987-94276997
38	MAX	chr11:94276716-94278923	H1-hESC	embryonic stem cell:	n/a	chr11:94276987-94276997
39	MAX	chr11:94277846-94278112	K562	blood:	n/a	n/a
40	SIN3AK20	chr11:94276768-94279082	PANC-1	pancreas:	n/a	n/a
41	CCNT2	chr11:94276792-94278206	K562	blood:	n/a	n/a
42	POLR2A	chr11:94276746-94278092	GM18951	blood:	n/a	n/a
43	MAZ	chr11:94276597-94278354	IMR90	lung:	n/a	chr11:94276987-94276997
44	MXI1	chr11:94276357-94279219	IMR90	lung:	n/a	n/a
45	MAX	chr11:94277418-94278792	H1-hESC	embryonic stem cell:	n/a	n/a
46	RAD21	chr11:94277724-94278103	H1-hESC	embryonic stem cell:	n/a	n/a
47	CHD2	chr11:94277965-94278274	GM12878	blood:	n/a	n/a
48	POLR2A	chr11:94276765-94278301	K562	blood:	n/a	n/a
49	CHD1	chr11:94277940-94278154	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr11:94277458..94279077-chr11:94299379..94301250,3	K562	blood:
2	chr11:94225466..94228271-chr11:94275709..94278301,3	K562	blood:
3	chr11:94226771..94229140-chr11:94275887..94279295,4	K562	blood:

Variant related genes	Relation type
PIWIL4	TF binding region
ENSG00000020922	Chromatin interaction
ENSG00000134627	Chromatin interaction
ENSG00000168876	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3390466	chr11:94276729-94279277	Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:94276400-94279200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
2	chr11:94276400-94279200	Active TSS	Brain Substantia Nigra	brain
3	chr11:94276400-94279600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
4	chr11:94276400-94280000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
5	chr11:94276600-94278200	Active TSS	Pancreas	Pancrea
6	chr11:94276600-94278200	Active TSS	Right Atrium	heart
7	chr11:94276600-94278200	Active TSS	Skeletal Muscle Male	skeletal muscle
8	chr11:94276600-94278200	Active TSS	A549	lung
9	chr11:94276600-94278400	Active TSS	Fetal Brain Female	brain
10	chr11:94276600-94278600	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr11:94276600-94278600	Active TSS	Breast Myoepithelial Primary Cells	Breast
12	chr11:94276600-94278600	Active TSS	Psoas Muscle	Psoas
13	chr11:94276600-94278600	Active TSS	NHLF	lung
14	chr11:94276600-94279200	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr11:94276600-94279200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr11:94276600-94279400	Active TSS	Hela-S3	cervix
17	chr11:94276600-94279600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
18	chr11:94276600-94279600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr11:94276600-94281000	Active TSS	Aorta	Aorta
20	chr11:94276800-94278200	Active TSS	Primary T killer memory cells from peripheral blood	blood
21	chr11:94276800-94278200	Active TSS	Fetal Lung	lung
22	chr11:94276800-94278200	Active TSS	Ovary	ovary
23	chr11:94276800-94278400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr11:94276800-94278400	Active TSS	Brain Angular Gyrus	brain
25	chr11:94276800-94278600	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
26	chr11:94276800-94278600	Active TSS	Brain Anterior Caudate	brain
27	chr11:94276800-94278600	Active TSS	Duodenum Smooth Muscle	Duodenum
28	chr11:94276800-94278600	Active TSS	Fetal Intestine Small	intestine
29	chr11:94276800-94278600	Active TSS	Sigmoid Colon	Sigmoid Colon
30	chr11:94276800-94279000	Active TSS	Colon Smooth Muscle	Colon
31	chr11:94276800-94279200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr11:94276800-94279200	Active TSS	Brain Hippocampus Middle	brain
33	chr11:94276800-94279200	Active TSS	NHDF-Ad	bronchial
34	chr11:94276800-94279400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr11:94276800-94279400	Active TSS	Small Intestine	intestine
36	chr11:94276800-94279600	Active TSS	Pancreatic Islets	Pancreatic Islet
37	chr11:94276800-94279600	Active TSS	HSMM	muscle
38	chr11:94276800-94279800	Active TSS	Brain Cingulate Gyrus	brain
39	chr11:94276800-94280000	Active TSS	Fetal Kidney	kidney
40	chr11:94276800-94280200	Active TSS	Gastric	stomach
41	chr11:94276800-94280200	Active TSS	Rectal Smooth Muscle	rectum
42	chr11:94276800-94282600	Active TSS	Fetal Intestine Large	intestine
43	chr11:94277000-94278200	Active TSS	Primary monocytes fromperipheralblood	blood
44	chr11:94277000-94278200	Active TSS	Primary T helper naive cells from peripheral blood	blood
45	chr11:94277000-94278400	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
46	chr11:94277000-94278400	Active TSS	Duodenum Mucosa	Duodenum
47	chr11:94277000-94278400	Active TSS	K562	blood
48	chr11:94277000-94278600	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr11:94277000-94278600	Active TSS	HSMMtube	muscle
50	chr11:94277000-94278800	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell

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