Variant report

Variant	rs201068604
Chromosome Location	chr5:60573179-60573180
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:60560892..60563443-chr5:60571695..60574490,2	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034038	chr5:60375328-60607654	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
2	nsv1028884	chr5:60414723-60732779	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
3	nsv823088	chr5:60572580-60577406	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv441955	chr5:60573147-60576860	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:60550400-60573400	Weak transcription	Gastric	stomach
2	chr5:60561000-60573200	Weak transcription	Brain Hippocampus Middle	brain
3	chr5:60564600-60575400	Weak transcription	Fetal Intestine Small	intestine
4	chr5:60564600-60576000	Weak transcription	Psoas Muscle	Psoas
5	chr5:60566000-60573200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr5:60566600-60573800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr5:60567800-60577200	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr5:60568800-60573200	Weak transcription	HSMMtube	muscle
9	chr5:60569000-60574000	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr5:60569200-60574600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
11	chr5:60569400-60573200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr5:60569400-60574000	Enhancers	Primary B cells from cord blood	blood
13	chr5:60569800-60573200	Weak transcription	Right Atrium	heart
14	chr5:60570000-60573200	Enhancers	Muscle Satellite Cultured Cells	--
15	chr5:60570000-60573800	Enhancers	NHLF	lung
16	chr5:60570200-60573200	Enhancers	NHDF-Ad	bronchial
17	chr5:60570600-60573200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr5:60570600-60573200	Enhancers	HUVEC	blood vessel
19	chr5:60570800-60573200	Weak transcription	Colon Smooth Muscle	Colon
20	chr5:60570800-60573600	Enhancers	Primary hematopoietic stem cells	blood
21	chr5:60570800-60573800	Enhancers	A549	lung
22	chr5:60570800-60574400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr5:60571000-60573400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr5:60571000-60573400	Enhancers	Placenta	Placenta
25	chr5:60571000-60573600	Enhancers	Primary B cells from peripheral blood	blood
26	chr5:60571000-60573800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr5:60571000-60574400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
28	chr5:60571000-60574400	Enhancers	NHEK	skin
29	chr5:60571200-60573600	Enhancers	ES-I3 Cell Line	embryonic stem cell
30	chr5:60571200-60573600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr5:60571200-60573600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr5:60571200-60573800	Enhancers	HMEC	breast
33	chr5:60571200-60574400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr5:60571200-60576600	Weak transcription	Pancreas	Pancrea
35	chr5:60571600-60574600	Weak transcription	Small Intestine	intestine
36	chr5:60571800-60573400	Enhancers	Esophagus	oesophagus
37	chr5:60571800-60574600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
38	chr5:60571800-60583800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
39	chr5:60572000-60573200	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chr5:60572000-60573200	Weak transcription	Spleen	Spleen
41	chr5:60572000-60573400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr5:60572000-60573400	Weak transcription	NH-A	brain
43	chr5:60572000-60574000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr5:60572000-60577000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr5:60572000-60582400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr5:60572400-60573200	Enhancers	Rectal Mucosa Donor 31	rectum
47	chr5:60572400-60573800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr5:60572600-60573400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr5:60572600-60573600	Enhancers	HUES6 Cell Line	embryonic stem cell
50	chr5:60572600-60573600	Weak transcription	Lung	lung

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