Variant report

Variant	rs2010718
Chromosome Location	chr3:105593981-105593982
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11708360	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1522287	0.86[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap]
rs1546733	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs1550711	1.00[CHB][hapmap];0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs1561919	0.82[ASN][1000 genomes]
rs1584028	0.82[ASN][1000 genomes]
rs16851440	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs1867191	1.00[CHB][hapmap];0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs2034157	0.86[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap]
rs2120105	0.86[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.96[YRI][hapmap];0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2301044	0.86[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap]
rs2301045	0.95[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap]
rs35903551	0.82[ASN][1000 genomes]
rs3772539	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs4476538	1.00[CHB][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs4894940	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs4894944	0.88[CHB][hapmap];0.81[ASN][1000 genomes]
rs6767808	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs6777124	0.81[ASN][1000 genomes]
rs6787175	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs726443	0.82[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap]
rs7640740	0.82[ASN][1000 genomes]
rs7646159	0.82[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs9832882	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs9876007	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755185	chr3:105378310-105597310	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1008564	chr3:105554580-105643435	Enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1008876	chr3:105554580-105645373	Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv877312	chr3:105560638-105916506	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:105589000-105595200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr3:105589000-105601200	Weak transcription	Aorta	Aorta
3	chr3:105589000-105601200	Weak transcription	Thymus	Thymus
4	chr3:105589000-105601200	Weak transcription	NH-A	brain
5	chr3:105589200-105601200	Weak transcription	Colon Smooth Muscle	Colon
6	chr3:105589400-105594400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr3:105589400-105596400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr3:105589400-105596800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr3:105589600-105594600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr3:105589800-105595000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr3:105589800-105595400	Weak transcription	Primary T cells from cord blood	blood
12	chr3:105589800-105595800	Weak transcription	Primary hematopoietic stem cells	blood
13	chr3:105589800-105595800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr3:105590000-105595600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr3:105590000-105595800	Weak transcription	Primary B cells from cord blood	blood
16	chr3:105590200-105595200	Weak transcription	Primary T helper cells PMA-I stimulated	--
17	chr3:105590200-105595200	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr3:105590400-105595800	Weak transcription	Fetal Kidney	kidney
19	chr3:105590600-105595200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
20	chr3:105590800-105595000	Weak transcription	Fetal Intestine Large	intestine
21	chr3:105590800-105595000	Weak transcription	Small Intestine	intestine
22	chr3:105590800-105595800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr3:105590800-105596000	Weak transcription	NHDF-Ad	bronchial
24	chr3:105590800-105597000	Weak transcription	Fetal Lung	lung
25	chr3:105591000-105595000	Weak transcription	Fetal Intestine Small	intestine
26	chr3:105591000-105595000	Weak transcription	Stomach Mucosa	stomach

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