Variant report

Variant	rs201087418
Chromosome Location	chr3:90430078-90430079
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv590970	chr3:89987871-90441306	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1003152	chr3:90257822-90485950	ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv999539	chr3:90268766-90485950	Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv834762	chr3:90279368-90439293	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv10801	chr3:90280071-90504635	Weak transcription ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv834763	chr3:90286654-90489157	Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1003056	chr3:90301998-90485950	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv590975	chr3:90309058-90452642	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv590976	chr3:90309058-90467825	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv820794	chr3:90312310-90504635	ZNF genes & repeats Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv819576	chr3:90313054-90442925	Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
12	nsv590978	chr3:90313054-90442925	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
13	nsv590980	chr3:90313394-90504645	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	nsv590983	chr3:90318628-90504645	Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
15	nsv590984	chr3:90338519-90493882	ZNF genes & repeats Active TSS Bivalent/Poised TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
16	nsv590985	chr3:90339717-90487354	ZNF genes & repeats Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
17	nsv1010817	chr3:90364248-90485950	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
18	esv3374706	chr3:90426362-90430660	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Enhancers Active TSS	n/a	n/a	inside rSNPs	diseases
19	esv3324132	chr3:90429957-90448044	ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
20	esv6948	chr3:90430039-90447987	Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:90426400-90430600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr3:90427400-90430400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
3	chr3:90427800-90430400	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
4	chr3:90429600-90430200	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr3:90429600-90430400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
6	chr3:90429600-90430600	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
7	chr3:90429800-90430200	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
8	chr3:90429800-90430200	ZNF genes & repeats	ES-WA7 Cell Line	embryonic stem cell
9	chr3:90429800-90430200	ZNF genes & repeats	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr3:90429800-90430200	Bivalent Enhancer	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr3:90429800-90430200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr3:90429800-90430200	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr3:90429800-90430200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
14	chr3:90429800-90430200	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
15	chr3:90429800-90430200	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
16	chr3:90429800-90430200	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
17	chr3:90429800-90430200	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
18	chr3:90429800-90430200	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--
19	chr3:90429800-90430200	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
20	chr3:90429800-90430200	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
21	chr3:90429800-90430200	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr3:90429800-90430200	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
23	chr3:90429800-90430200	Flanking Bivalent TSS/Enh	Primary T killer memory cells from peripheral blood	blood
24	chr3:90429800-90430200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr3:90429800-90430200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr3:90429800-90430200	ZNF genes & repeats	Aorta	Aorta
27	chr3:90429800-90430200	ZNF genes & repeats	Brain Anterior Caudate	brain
28	chr3:90429800-90430200	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
29	chr3:90429800-90430200	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
30	chr3:90429800-90430200	ZNF genes & repeats	Colonic Mucosa	Colon
31	chr3:90429800-90430200	ZNF genes & repeats	Colon Smooth Muscle	Colon
32	chr3:90429800-90430200	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
33	chr3:90429800-90430200	ZNF genes & repeats	Fetal Heart	heart
34	chr3:90429800-90430200	ZNF genes & repeats	Fetal Kidney	kidney
35	chr3:90429800-90430200	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
36	chr3:90429800-90430200	ZNF genes & repeats	Fetal Lung	lung
37	chr3:90429800-90430200	ZNF genes & repeats	Left Ventricle	heart
38	chr3:90429800-90430200	Flanking Bivalent TSS/Enh	Psoas Muscle	Psoas
39	chr3:90429800-90430200	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
40	chr3:90429800-90430200	Bivalent/Poised TSS	Right Atrium	heart
41	chr3:90429800-90430200	ZNF genes & repeats	Right Ventricle	heart
42	chr3:90429800-90430200	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
43	chr3:90429800-90430200	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
44	chr3:90429800-90430200	ZNF genes & repeats	Small Intestine	intestine
45	chr3:90429800-90430200	ZNF genes & repeats	Thymus	Thymus
46	chr3:90429800-90430200	ZNF genes & repeats	HMEC	breast
47	chr3:90429800-90430200	ZNF genes & repeats	HUVEC	blood vessel
48	chr3:90429800-90430200	ZNF genes & repeats	NH-A	brain
49	chr3:90429800-90430200	Active TSS	NHEK	skin
50	chr3:90429800-90430200	ZNF genes & repeats	Osteobl	bone

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