Variant report

Variant	rs201124004
Chromosome Location	chr15:42863185-42863186
allele	-/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:42854171..42864590-chr15:42864872..42869799,12	K562	blood:
2	chr15:42842458..42844772-chr15:42862212..42863902,2	K562	blood:

Variant related genes	Relation type
ENSG00000159433	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528725	chr15:42755555-43104406	Weak transcription Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv976927	chr15:42862948-42868443	Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:42841600-42866800	Weak transcription	Stomach Mucosa	stomach
2	chr15:42841800-42867000	Weak transcription	Ovary	ovary
3	chr15:42842200-42867000	Weak transcription	Psoas Muscle	Psoas
4	chr15:42842400-42867000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr15:42842600-42867400	Weak transcription	Small Intestine	intestine
6	chr15:42842800-42867000	Weak transcription	Fetal Kidney	kidney
7	chr15:42849400-42866800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr15:42851600-42866600	Weak transcription	Fetal Heart	heart
9	chr15:42852000-42867000	Weak transcription	Colonic Mucosa	Colon
10	chr15:42854200-42867000	Weak transcription	HSMMtube	muscle
11	chr15:42854800-42867000	Weak transcription	Pancreas	Pancrea
12	chr15:42855000-42864400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr15:42855200-42867000	Weak transcription	Esophagus	oesophagus
14	chr15:42855200-42867800	Weak transcription	Aorta	Aorta
15	chr15:42856000-42867000	Weak transcription	A549	lung
16	chr15:42857600-42867000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr15:42857800-42867200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr15:42857800-42867200	Weak transcription	Spleen	Spleen
19	chr15:42858000-42867000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr15:42858200-42867000	Weak transcription	Right Ventricle	heart
21	chr15:42858400-42866400	Weak transcription	Rectal Smooth Muscle	rectum
22	chr15:42858800-42867000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr15:42858800-42867000	Weak transcription	Brain Substantia Nigra	brain
24	chr15:42858800-42867000	Weak transcription	Colon Smooth Muscle	Colon
25	chr15:42859000-42867200	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr15:42859000-42868000	Weak transcription	Fetal Brain Male	brain
27	chr15:42859200-42866400	Weak transcription	HepG2	liver
28	chr15:42859200-42867000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr15:42859200-42867000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
30	chr15:42859200-42867000	Weak transcription	Brain Angular Gyrus	brain
31	chr15:42859200-42867000	Weak transcription	Fetal Lung	lung
32	chr15:42859200-42867000	Weak transcription	HSMM	muscle
33	chr15:42859200-42867000	Weak transcription	NH-A	brain
34	chr15:42859200-42867000	Weak transcription	NHEK	skin
35	chr15:42859400-42866800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
36	chr15:42859400-42866800	Weak transcription	Hela-S3	cervix
37	chr15:42859400-42867000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
38	chr15:42859400-42867000	Weak transcription	Primary T helper cells PMA-I stimulated	--
39	chr15:42859400-42867000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr15:42859400-42867800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr15:42859600-42863600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr15:42859600-42866400	Weak transcription	Rectal Mucosa Donor 31	rectum
43	chr15:42859600-42866400	Weak transcription	K562	blood
44	chr15:42859600-42866600	Weak transcription	Rectal Mucosa Donor 29	rectum
45	chr15:42859600-42866800	Weak transcription	Fetal Muscle Leg	muscle
46	chr15:42859600-42866800	Weak transcription	Placenta	Placenta
47	chr15:42859600-42867000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr15:42859600-42867000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
49	chr15:42859600-42867000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
50	chr15:42859600-42867000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links