Variant report

Variant	rs201124599
Chromosome Location	chr4:148896352-148896353
allele	-/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:148881694..148883564-chr4:148895633..148897317,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498083	chr4:148519825-148917583	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
2	nsv880244	chr4:148764252-148920089	Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1029845	chr4:148766290-148916437	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1030001	chr4:148773479-148916437	Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1017904	chr4:148814133-148975348	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	esv3398182	chr4:148895102-148898800	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:148859400-148898000	Weak transcription	Duodenum Mucosa	Duodenum
2	chr4:148864400-148896800	Weak transcription	Osteobl	bone
3	chr4:148866400-148927400	Weak transcription	Thymus	Thymus
4	chr4:148868200-148902600	Weak transcription	NH-A	brain
5	chr4:148878400-148896400	Weak transcription	HMEC	breast
6	chr4:148878600-148896400	Weak transcription	NHEK	skin
7	chr4:148880200-148896600	Weak transcription	Fetal Heart	heart
8	chr4:148883400-148896400	Weak transcription	Gastric	stomach
9	chr4:148885600-148905200	Weak transcription	Fetal Intestine Small	intestine
10	chr4:148885600-148905400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr4:148885600-148939000	Weak transcription	Pancreas	Pancrea
12	chr4:148885800-148896400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr4:148885800-148896400	Weak transcription	Lung	lung
14	chr4:148885800-148907000	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr4:148885800-148912800	Weak transcription	Fetal Lung	lung
16	chr4:148886000-148917600	Weak transcription	Esophagus	oesophagus
17	chr4:148886800-148901800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr4:148888200-148896600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr4:148888800-148896400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr4:148888800-148896400	Weak transcription	Fetal Muscle Leg	muscle
21	chr4:148889000-148896400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr4:148889000-148896600	Weak transcription	Aorta	Aorta
23	chr4:148889000-148905400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr4:148889200-148899400	Weak transcription	Fetal Muscle Trunk	muscle
25	chr4:148889200-148936200	Weak transcription	Fetal Intestine Large	intestine
26	chr4:148889400-148905400	Weak transcription	NHLF	lung
27	chr4:148889600-148897000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
28	chr4:148889800-148896400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr4:148890400-148897800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
30	chr4:148891200-148896400	Weak transcription	Adipose Nuclei	Adipose
31	chr4:148891400-148896400	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr4:148891400-148896400	Weak transcription	Fetal Stomach	stomach
33	chr4:148891400-148896400	Weak transcription	Right Ventricle	heart
34	chr4:148891400-148905000	Weak transcription	Stomach Mucosa	stomach
35	chr4:148891400-148905400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr4:148891600-148896400	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr4:148891600-148896400	Weak transcription	Left Ventricle	heart
38	chr4:148891600-148896400	Weak transcription	Ovary	ovary
39	chr4:148891600-148896800	Weak transcription	Cortex derived primary cultured neurospheres	brain
40	chr4:148891600-148896800	Weak transcription	Stomach Smooth Muscle	stomach
41	chr4:148891600-148905400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr4:148891600-148912800	Weak transcription	Fetal Kidney	kidney
43	chr4:148891600-148920600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr4:148891600-148928000	Weak transcription	A549	lung
45	chr4:148891800-148896400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr4:148891800-148901600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
47	chr4:148892000-148898200	Weak transcription	Primary hematopoietic stem cells	blood
48	chr4:148892600-148896400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr4:148892600-148897000	Weak transcription	HUVEC	blood vessel
50	chr4:148892800-148896400	Weak transcription	Skeletal Muscle Male	skeletal muscle

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