Variant report

Variant	rs2011525
Chromosome Location	chr4:95393052-95393053
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:95392600..95395263-chr4:95399484..95402281,2	K562	blood:
2	chr4:95370572..95375006-chr4:95392814..95398677,7	K562	blood:
3	chr4:95391486..95396177-chr4:95398178..95402962,4	K562	blood:
4	chr4:95371844..95375246-chr4:95391299..95394379,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000203436	Chromatin interaction
ENSG00000163110	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs17378777	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1820475	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2433320	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2433322	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2433323	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2433326	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2438146	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2438147	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2438148	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2452553	0.83[AMR][1000 genomes]
rs2510762	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2510763	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2510765	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28697067	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34570027	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6812165	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs774982	0.81[EUR][1000 genomes]
rs9990678	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv993495	chr4:94992315-95482578	Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv594901	chr4:95254730-95493246	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv1003743	chr4:95255957-95469831	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95374200-95395400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr4:95374200-95400000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr4:95374800-95398200	Weak transcription	Esophagus	oesophagus
4	chr4:95375000-95440200	Weak transcription	Primary T cells from cord blood	blood
5	chr4:95375800-95401600	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr4:95379200-95398400	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr4:95380200-95393400	Weak transcription	HSMMtube	muscle
8	chr4:95380600-95394600	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr4:95381200-95393400	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr4:95383000-95395800	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr4:95383000-95396000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr4:95383000-95396000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr4:95384200-95393600	Weak transcription	Hela-S3	cervix
14	chr4:95387400-95393200	Weak transcription	Small Intestine	intestine
15	chr4:95387400-95410000	Weak transcription	NHLF	lung
16	chr4:95387400-95420800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr4:95389600-95393400	Weak transcription	Stomach Mucosa	stomach
18	chr4:95389600-95406000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr4:95389800-95393600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr4:95389800-95393600	Weak transcription	Aorta	Aorta
21	chr4:95390200-95393400	Weak transcription	HMEC	breast
22	chr4:95390200-95393600	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr4:95390600-95393400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr4:95390600-95393400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr4:95390600-95393400	Weak transcription	Adipose Nuclei	Adipose
26	chr4:95390800-95393200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr4:95390800-95393200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr4:95390800-95393200	Weak transcription	Rectal Smooth Muscle	rectum
29	chr4:95390800-95393400	Weak transcription	Right Ventricle	heart
30	chr4:95390800-95393400	Weak transcription	Stomach Smooth Muscle	stomach
31	chr4:95390800-95393600	Weak transcription	Brain Anterior Caudate	brain
32	chr4:95390800-95393600	Weak transcription	Right Atrium	heart
33	chr4:95390800-95393600	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr4:95390800-95395800	Weak transcription	Ovary	ovary
35	chr4:95390800-95397000	Weak transcription	Colon Smooth Muscle	Colon
36	chr4:95390800-95397800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
37	chr4:95390800-95398200	Weak transcription	Gastric	stomach
38	chr4:95391400-95393400	Weak transcription	Left Ventricle	heart
39	chr4:95391400-95394000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr4:95391400-95394200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr4:95391400-95394600	Weak transcription	Pancreas	Pancrea
42	chr4:95392000-95393200	Strong transcription	HSMM	muscle
43	chr4:95392000-95394400	Enhancers	Skeletal Muscle Male	skeletal muscle
44	chr4:95392200-95393400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr4:95392200-95393600	Enhancers	Fetal Heart	heart
46	chr4:95392200-95395000	Enhancers	HUVEC	blood vessel
47	chr4:95392200-95395000	Enhancers	Osteobl	bone
48	chr4:95392200-95395800	Weak transcription	HUES64 Cell Line	embryonic stem cell
49	chr4:95392400-95393200	Weak transcription	NHEK	skin
50	chr4:95392400-95393400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links