Variant report
| Variant | rs2012063 |
|---|---|
| Chromosome Location | chr8:120280526-120280527 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr8:120278648..120281614-chr8:120282840..120285748,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs1026594 | 0.86[EUR][1000 genomes] |
| rs11776529 | 0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs11780135 | 0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs11781436 | 0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs13439193 | 0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1381340 | 0.84[ASN][1000 genomes] |
| rs1425069 | 0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs1966532 | 0.87[EUR][1000 genomes] |
| rs2326212 | 0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs2326224 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs2927022 | 0.83[ASN][1000 genomes] |
| rs2927024 | 0.84[ASN][1000 genomes] |
| rs2927025 | 0.82[AMR][1000 genomes];0.84[ASN][1000 genomes] |
| rs2957352 | 0.84[ASN][1000 genomes] |
| rs2970399 | 0.83[ASN][1000 genomes] |
| rs2970400 | 0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs2970401 | 0.84[ASN][1000 genomes] |
| rs2970402 | 0.84[ASN][1000 genomes] |
| rs2970403 | 0.84[ASN][1000 genomes] |
| rs2970405 | 0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs3824331 | 0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs7004820 | 0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs73314709 | 0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs765892 | 0.84[ASN][1000 genomes] |
| rs765893 | 0.84[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv868916 | chr8:119911943-120762250 | Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 26 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:120277000-120281600 | Weak transcription | Fetal Muscle Leg | muscle |
