Variant report

Variant	rs201207812
Chromosome Location	chr6:149375866-149375867
allele	-/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:149373800..149377779-chr6:149379783..149384195,7	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032690	chr6:149206106-149398712	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv1032319	chr6:149271433-149550525	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv538470	chr6:149271433-149550525	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv830842	chr6:149272321-149427340	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
5	nsv823858	chr6:149375840-149376648	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149305400-149381400	Weak transcription	Gastric	stomach
2	chr6:149354400-149400600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr6:149355800-149381600	Weak transcription	Right Atrium	heart
4	chr6:149359200-149380200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr6:149359200-149380200	Weak transcription	Fetal Muscle Trunk	muscle
6	chr6:149359200-149381400	Weak transcription	Rectal Smooth Muscle	rectum
7	chr6:149359200-149381400	Weak transcription	Stomach Smooth Muscle	stomach
8	chr6:149359200-149381600	Weak transcription	Ovary	ovary
9	chr6:149359200-149383600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr6:149359400-149379200	Weak transcription	Fetal Lung	lung
11	chr6:149359600-149380200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr6:149362600-149385200	Weak transcription	Aorta	Aorta
13	chr6:149362800-149401400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr6:149363000-149380800	Weak transcription	Fetal Stomach	stomach
15	chr6:149363200-149394000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr6:149367400-149376000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr6:149367600-149380200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr6:149368200-149376000	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr6:149368200-149380400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr6:149368200-149380400	Weak transcription	Spleen	Spleen
21	chr6:149368200-149381400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr6:149368200-149381800	Weak transcription	Small Intestine	intestine
23	chr6:149368600-149380400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chr6:149368800-149376200	Weak transcription	Primary B cells from cord blood	blood
25	chr6:149368800-149377000	Weak transcription	Primary hematopoietic stem cells	blood
26	chr6:149368800-149380200	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr6:149369000-149379200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr6:149369000-149382000	Weak transcription	NHDF-Ad	bronchial
29	chr6:149369000-149398800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr6:149369200-149380600	Weak transcription	NHLF	lung
31	chr6:149370200-149380200	Weak transcription	HSMMtube	muscle
32	chr6:149370400-149376600	Weak transcription	Fetal Heart	heart
33	chr6:149371400-149396400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr6:149371800-149377800	Weak transcription	Muscle Satellite Cultured Cells	--
35	chr6:149371800-149397000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr6:149372400-149380200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
37	chr6:149372600-149376000	Weak transcription	HUES64 Cell Line	embryonic stem cell
38	chr6:149372800-149376800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
39	chr6:149372800-149380200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr6:149372800-149380400	Weak transcription	H9 Cell Line	embryonic stem cell
41	chr6:149373000-149380600	Weak transcription	Cortex derived primary cultured neurospheres	brain
42	chr6:149373800-149376400	Weak transcription	HUES48 Cell Line	embryonic stem cell
43	chr6:149374400-149381000	Enhancers	Dnd41	blood
44	chr6:149374800-149376200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
45	chr6:149374800-149377600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
46	chr6:149375000-149376000	Enhancers	Primary T helper naive cells from peripheral blood	blood
47	chr6:149375000-149376000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
48	chr6:149375000-149376200	Enhancers	Primary T cells fromperipheralblood	blood
49	chr6:149375000-149376200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
50	chr6:149375000-149376200	Enhancers	Liver	Liver

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