Variant report

Variant	rs201211511
Chromosome Location	chr4:88268920-88268921
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870296	chr4:88173534-88295927	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv1004518	chr4:88218473-88354403	Weak transcription Active TSS Genic enhancers Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv4412	chr4:88237813-88283368	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv1002789	chr4:88239340-88606485	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
5	esv3513966	chr4:88267269-88274737	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	esv2559237	chr4:88267456-88274841	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	esv3388226	chr4:88267578-88275176	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv436424	chr4:88267620-88274354	Weak transcription Strong transcription ZNF genes & repeats	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv513144	chr4:88267927-88274413	ZNF genes & repeats Weak transcription Strong transcription Enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	esv2000200	chr4:88268079-88274495	Weak transcription Strong transcription ZNF genes & repeats Enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	esv3395716	chr4:88268123-88274408	Weak transcription Strong transcription ZNF genes & repeats Enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	esv3513968	chr4:88268125-88274401	Weak transcription Strong transcription ZNF genes & repeats Enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
13	esv3513965	chr4:88268130-88274511	Weak transcription Strong transcription ZNF genes & repeats Enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
14	esv3467237	chr4:88268173-88274381	Weak transcription ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
15	esv3467238	chr4:88268173-88274381	Weak transcription Strong transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
16	esv3513967	chr4:88268187-88274350	Weak transcription Strong transcription ZNF genes & repeats	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
17	esv3513969	chr4:88268187-88274350	Weak transcription Strong transcription ZNF genes & repeats	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
18	nsv499051	chr4:88268243-88274316	Weak transcription Strong transcription ZNF genes & repeats	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
19	nsv293528	chr4:88268261-88274315	Weak transcription ZNF genes & repeats Strong transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:88253800-88274600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr4:88254800-88311800	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr4:88255000-88292400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr4:88255200-88274400	Weak transcription	GM12878-XiMat	blood
5	chr4:88255200-88285600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr4:88255200-88293800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr4:88255800-88278200	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr4:88256000-88274800	Weak transcription	A549	lung
9	chr4:88256200-88292800	Weak transcription	Gastric	stomach
10	chr4:88256200-88310600	Weak transcription	Right Ventricle	heart
11	chr4:88257000-88291000	Weak transcription	HUVEC	blood vessel
12	chr4:88257800-88311800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr4:88258000-88278000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr4:88258000-88285400	Weak transcription	Small Intestine	intestine
15	chr4:88259200-88277200	Weak transcription	Colon Smooth Muscle	Colon
16	chr4:88259200-88283000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr4:88261000-88280000	Weak transcription	Left Ventricle	heart
18	chr4:88261000-88283200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr4:88261200-88285000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
20	chr4:88262200-88280200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
21	chr4:88262600-88274200	Weak transcription	K562	blood
22	chr4:88262600-88274400	Weak transcription	Rectal Smooth Muscle	rectum
23	chr4:88263000-88274600	Weak transcription	Primary T helper cells PMA-I stimulated	--
24	chr4:88263000-88274600	Weak transcription	Colonic Mucosa	Colon
25	chr4:88263000-88277000	Weak transcription	Lung	lung
26	chr4:88263000-88277000	Weak transcription	Stomach Smooth Muscle	stomach
27	chr4:88263000-88278000	Weak transcription	Stomach Mucosa	stomach
28	chr4:88263000-88280000	Weak transcription	Pancreas	Pancrea
29	chr4:88263200-88281600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
30	chr4:88263600-88274600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr4:88264000-88277000	Weak transcription	HSMM	muscle
32	chr4:88264200-88285600	Weak transcription	Spleen	Spleen
33	chr4:88264400-88279800	Weak transcription	Hela-S3	cervix
34	chr4:88266200-88285000	Weak transcription	Brain Cingulate Gyrus	brain
35	chr4:88266400-88275000	Weak transcription	Aorta	Aorta
36	chr4:88266400-88278200	Weak transcription	Brain Angular Gyrus	brain
37	chr4:88266400-88292200	Weak transcription	Fetal Brain Male	brain
38	chr4:88266600-88275000	Weak transcription	Brain Hippocampus Middle	brain
39	chr4:88266600-88275200	Weak transcription	Muscle Satellite Cultured Cells	--
40	chr4:88266600-88275200	Weak transcription	Fetal Muscle Leg	muscle
41	chr4:88266600-88278000	Weak transcription	Thymus	Thymus
42	chr4:88266600-88288200	Weak transcription	Brain Germinal Matrix	brain
43	chr4:88267200-88274600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
44	chr4:88267200-88281400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
45	chr4:88267400-88274200	Weak transcription	Dnd41	blood
46	chr4:88267400-88274400	Weak transcription	Fetal Lung	lung
47	chr4:88267400-88274400	Weak transcription	Rectal Mucosa Donor 29	rectum
48	chr4:88267400-88274600	Weak transcription	Adipose Nuclei	Adipose
49	chr4:88267400-88278000	Weak transcription	Primary B cells from peripheral blood	blood
50	chr4:88267400-88278000	Weak transcription	Brain Inferior Temporal Lobe	brain

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