Variant report

Variant	rs201224326
Chromosome Location	chr18:43796078-43796079
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr18:43793217..43797206-chr18:43801637..43804775,4	K562	blood:
2	chr18:43793521..43796168-chr18:43800123..43802116,2	MCF-7	breast:
3	chr18:43792929..43795113-chr18:43795135..43797949,3	K562	blood:
4	chr18:43795518..43797206-chr18:43801637..43804077,2	K562	blood:

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064031	chr18:43782309-43878806	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv960275	chr18:43795927-43796427	Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:43763400-43799200	Weak transcription	Stomach Smooth Muscle	stomach
2	chr18:43769200-43802800	Weak transcription	Brain Hippocampus Middle	brain
3	chr18:43776400-43802000	Weak transcription	Brain Germinal Matrix	brain
4	chr18:43777000-43812000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr18:43777800-43805000	Weak transcription	Fetal Intestine Small	intestine
6	chr18:43784600-43802200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr18:43789400-43796200	Weak transcription	A549	lung
8	chr18:43791600-43799600	Weak transcription	Psoas Muscle	Psoas
9	chr18:43791600-43804200	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr18:43791800-43798600	Weak transcription	K562	blood
11	chr18:43791800-43800000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr18:43792200-43814600	Weak transcription	Colon Smooth Muscle	Colon
13	chr18:43792600-43799800	Weak transcription	NHLF	lung
14	chr18:43792800-43799600	Weak transcription	NHDF-Ad	bronchial
15	chr18:43794400-43800200	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr18:43794400-43801600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr18:43794600-43796200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr18:43794600-43796400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr18:43794600-43801600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr18:43794800-43796400	Enhancers	Right Ventricle	heart
21	chr18:43794800-43797400	Weak transcription	Colonic Mucosa	Colon
22	chr18:43794800-43797800	Weak transcription	Stomach Mucosa	stomach
23	chr18:43794800-43802400	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr18:43794800-43802600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr18:43794800-43815000	Weak transcription	Rectal Smooth Muscle	rectum
26	chr18:43795000-43796200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
27	chr18:43795000-43796200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
28	chr18:43795000-43799000	Weak transcription	Fetal Kidney	kidney
29	chr18:43795200-43796200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
30	chr18:43795600-43796600	Strong transcription	Cortex derived primary cultured neurospheres	brain
31	chr18:43795600-43800400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr18:43795600-43800400	Strong transcription	Monocytes-CD14+_RO01746	blood
33	chr18:43795800-43796200	Strong transcription	Primary T helper cells fromperipheralblood	blood
34	chr18:43795800-43796400	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr18:43795800-43796400	Strong transcription	Lung	lung
36	chr18:43795800-43796600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr18:43795800-43796600	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr18:43795800-43796600	Transcr. at gene 5' and 3'	Liver	Liver
39	chr18:43795800-43796600	Strong transcription	Brain Cingulate Gyrus	brain
40	chr18:43795800-43796600	Strong transcription	Fetal Muscle Leg	muscle
41	chr18:43795800-43796600	Strong transcription	Fetal Stomach	stomach
42	chr18:43795800-43796600	Enhancers	Right Atrium	heart
43	chr18:43795800-43796600	Strong transcription	Spleen	Spleen
44	chr18:43795800-43796600	Strong transcription	HUVEC	blood vessel
45	chr18:43795800-43796800	Strong transcription	Primary T cells from cord blood	blood
46	chr18:43795800-43796800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
47	chr18:43795800-43796800	Strong transcription	Fetal Brain Male	brain
48	chr18:43795800-43796800	Strong transcription	HSMMtube	muscle
49	chr18:43795800-43797000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr18:43795800-43797000	Strong transcription	Brain Anterior Caudate	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links