Variant report

Variant	rs201228786
Chromosome Location	chr7:80252821-80252822
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr7:80252783-80252983	MCF10A-Er-Src	breast:	n/a	n/a
2	CEBPB	chr7:80252795-80253074	HepG2	liver:	n/a	chr7:80252895-80252908 chr7:80252895-80252906 chr7:80252913-80252926 chr7:80252897-80252908 chr7:80252915-80252926 chr7:80252895-80252908 chr7:80252915-80252926 chr7:80252913-80252926 chr7:80252913-80252924 chr7:80252895-80252908
3	FOS	chr7:80252805-80253082	MCF10A-Er-Src	breast:	n/a	n/a
4	STAT3	chr7:80252817-80253048	MCF10A-Er-Src	breast:	n/a	n/a
5	STAT3	chr7:80252731-80253137	MCF10A-Er-Src	breast:	n/a	chr7:80252771-80252779
6	FOS	chr7:80252780-80253106	MCF10A-Er-Src	breast:	n/a	n/a
7	MYC	chr7:80252787-80253080	MCF10A-Er-Src	breast:	n/a	n/a
8	MYC	chr7:80252808-80253082	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
CD36	TF binding region

Extended variants
information (count: 13 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888524	chr7:80107798-80723062	Active TSS Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv831043	chr7:80119414-80322092	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv948605	chr7:80119690-80298887	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1020682	chr7:80120651-80297697	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv464606	chr7:80177084-80311794	Active TSS Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
6	nsv607682	chr7:80177084-80311794	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
7	nsv1025144	chr7:80197286-80271841	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv1026688	chr7:80231657-80307236	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
9	nsv1020745	chr7:80231657-80309495	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
10	nsv888526	chr7:80240943-80354229	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
11	nsv888527	chr7:80248029-80279460	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv888528	chr7:80252518-80280117	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
13	nsv888529	chr7:80252518-80295701	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:80244400-80253000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr7:80244800-80253000	Weak transcription	Duodenum Mucosa	Duodenum
3	chr7:80246800-80254000	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr7:80251000-80253400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr7:80251200-80253000	Enhancers	Adipose Nuclei	Adipose
6	chr7:80251200-80253600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr7:80251200-80255800	Enhancers	Skeletal Muscle Male	skeletal muscle
8	chr7:80251400-80253400	Enhancers	NHDF-Ad	bronchial
9	chr7:80251400-80253400	Enhancers	NHLF	lung
10	chr7:80251600-80253200	Enhancers	HSMMtube	muscle
11	chr7:80251600-80253200	Enhancers	Osteobl	bone
12	chr7:80251600-80253400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr7:80251600-80253400	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr7:80251600-80253400	Enhancers	HSMM	muscle
15	chr7:80251600-80253600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr7:80251600-80253600	Enhancers	HMEC	breast
17	chr7:80251800-80253000	Weak transcription	Left Ventricle	heart
18	chr7:80251800-80253200	Weak transcription	Psoas Muscle	Psoas
19	chr7:80251800-80253400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr7:80251800-80253400	Enhancers	Fetal Heart	heart
21	chr7:80251800-80253400	Enhancers	NHEK	skin
22	chr7:80251800-80260000	Weak transcription	Right Ventricle	heart
23	chr7:80252000-80253000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr7:80252000-80253000	Weak transcription	Right Atrium	heart
25	chr7:80252000-80260000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr7:80252400-80254400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr7:80252600-80253000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr7:80252600-80253000	Enhancers	Monocytes-CD14+_RO01746	blood
29	chr7:80252600-80253400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr7:80252600-80253600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr7:80252800-80253000	Enhancers	Pancreatic Islets	Pancreatic Islet
32	chr7:80252800-80253400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr7:80252800-80253400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr7:80252800-80253400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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