The 2.0 version of rSNPBase
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Variant report
Variant
rs201236204
Chromosome Location
chr17:59613428-59613429
allele
-/T
Outlinks
Ensembl
 
UCSC
Chromatin state
Related regulatory elements
Target genes
Other information
TF binding region (count:0)
CpG islands (count:0)
Chromatin interactive region (count:5)
LncRNA region (count:0)
Mature miRNA region (count: 0)
miRNA target sites (count:0)
No data
No data
(count:5 , 50 per page) page:
1
No.
Distal block
Cell Line
Cell type
Cell Stage
1
chr17:59611491..59613980-chr7:73244808..73247104,2
MCF-7
breast:
2
chr17:59609024..59611346-chr17:59613049..59615889,2
K562
blood:
3
chr17:59611230..59614063-chr2:169311401..169314222,2
MCF-7
breast:
4
chr17:57920187..57922309-chr17:59613105..59615469,2
MCF-7
breast:
5
chr17:59612978..59614544-chr20:49346043..49348789,2
MCF-7
breast:
No data
No data
No data
Variant related genes
Relation type
ENSG00000172292
Chromatin interaction
ENSG00000189143
Chromatin interaction
ENSG00000124171
Chromatin interaction
Extended variants information (count: 2 )
Associated traits (count: 0)
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
No.
Variant name
Chromosome position
Chromatin state
Related regulatory elements
Target genes
Extended variants
Associated traits
1
nsv457864
chr17:59612041-59646764
Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS
Chromatin interactive region
26 gene(s)
inside rSNPs
diseases
2
nsv575840
chr17:59612041-59646764
Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh
Chromatin interactive region
26 gene(s)
inside rSNPs
diseases
No data
Chromatin state (count:0 , 50 per page) page:
No data
Quick Search:
Input of quick search could be:
dbSNP/dbVar ID:
rs12345
/
nsv7879
a single nucleotide as 0-based coordinates:
chr1:12345
chromosomal regions:
chr1:12345-34567
what's new
New variant types
New dimension of annotation
New regulatory manner
More detailed annotation on variant overlapped TFBS
More extended data
New search manner
Quick links