Variant report

Variant	rs201247167
Chromosome Location	chr3:160031397-160031398
allele	-/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:160031130..160033296-chr3:160034351..160037164,2	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532666	chr3:159777847-160703202	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv1000453	chr3:159853305-160366357	Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	259 gene(s)	inside rSNPs	diseases
3	nsv536779	chr3:159853305-160366357	Strong transcription Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	259 gene(s)	inside rSNPs	diseases
4	esv1800136	chr3:159950498-160278160	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
5	esv1801767	chr3:159950498-160279411	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
6	esv1801474	chr3:160012843-160153305	Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	206 gene(s)	inside rSNPs	diseases
7	esv3390469	chr3:160029658-160031831	Weak transcription Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	esv3400984	chr3:160029683-160032231	Weak transcription Enhancers Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	esv3389981	chr3:160030008-160031606	Weak transcription Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv979789	chr3:160031241-160032292	Weak transcription Enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:159971400-160035800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:159974200-160038000	Weak transcription	Fetal Brain Male	brain
3	chr3:159975000-160034200	Weak transcription	Fetal Intestine Large	intestine
4	chr3:159975200-160036000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr3:159975600-160046600	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr3:159976200-160039000	Weak transcription	Brain Cingulate Gyrus	brain
7	chr3:159977800-160073000	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr3:159981200-160038200	Weak transcription	Esophagus	oesophagus
9	chr3:159984800-160038200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr3:159992400-160035400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr3:159992800-160033400	Weak transcription	Fetal Kidney	kidney
12	chr3:159992800-160036400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr3:159992800-160036600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr3:159995400-160034200	Weak transcription	Primary hematopoietic stem cells	blood
15	chr3:159996400-160037000	Weak transcription	Primary B cells from cord blood	blood
16	chr3:159996600-160038400	Weak transcription	Brain Hippocampus Middle	brain
17	chr3:159996800-160033600	Weak transcription	Primary B cells from peripheral blood	blood
18	chr3:159997000-160033800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr3:159997200-160037200	Weak transcription	Brain Angular Gyrus	brain
20	chr3:159997200-160046600	Weak transcription	Fetal Lung	lung
21	chr3:159997600-160035600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr3:159999800-160033800	Weak transcription	Aorta	Aorta
23	chr3:159999800-160034000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr3:159999800-160035400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr3:159999800-160047800	Weak transcription	Lung	lung
26	chr3:160010000-160033000	Weak transcription	Fetal Intestine Small	intestine
27	chr3:160010000-160034000	Weak transcription	Pancreas	Pancrea
28	chr3:160010000-160047800	Weak transcription	HepG2	liver
29	chr3:160010000-160048600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr3:160010000-160048800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr3:160010200-160034000	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr3:160010800-160032000	Weak transcription	Fetal Muscle Leg	muscle
33	chr3:160012200-160033000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr3:160014600-160039400	Weak transcription	GM12878-XiMat	blood
35	chr3:160014800-160037200	Weak transcription	Colon Smooth Muscle	Colon
36	chr3:160014800-160039600	Weak transcription	Skeletal Muscle Female	skeletal muscle
37	chr3:160015000-160038200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr3:160015000-160044000	Weak transcription	Osteobl	bone
39	chr3:160015400-160048400	Weak transcription	A549	lung
40	chr3:160015800-160048800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr3:160018000-160048600	Weak transcription	HSMM	muscle
42	chr3:160020600-160037600	Weak transcription	NH-A	brain
43	chr3:160021000-160033000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr3:160021200-160043400	Weak transcription	NHDF-Ad	bronchial
45	chr3:160022400-160031600	Weak transcription	HMEC	breast
46	chr3:160022400-160038800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
47	chr3:160023000-160036800	Weak transcription	Stomach Smooth Muscle	stomach
48	chr3:160023200-160037800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr3:160024200-160035600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
50	chr3:160024400-160043400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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